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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_6669.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | WOX | ||||||||
Protein Properties | Length: 261aa MW: 28211.6 Da PI: 7.0153 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47.1 | 4.1e-15 | 29 | 89 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p ++e +++ l + +++V++WFqNrR + ++ MLOC_6669.1 29 RSRWAPKPEQILILESIFNSgMVNPAKDETARIRLLLerfgAVRDANVFYWFQNRRSRSRR 89 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 104.4 | 7.7e-34 | 28 | 90 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RW+P+peQi iLe++++sG+++P+k+e+ ri+ Le++G+++d+NVfyWFQNr++R+r++ MLOC_6669.1 28 TRSRWAPKPEQILILESIFNSGMVNPAKDETARIRLLLERFGAVRDANVFYWFQNRRSRSRRR 90 689**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.13E-13 | 22 | 95 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-8 | 24 | 94 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.224 | 25 | 90 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.3E-5 | 27 | 94 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.3E-13 | 29 | 89 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MEQHHHGQAP TPTHRGGRSS EGGEPTTTRS RWAPKPEQIL ILESIFNSGM VNPAKDETAR 60 IRLLLERFGA VRDANVFYWF QNRRSRSRRR ARQLQQSCGG TGDADQLPSN AVLAGHGYHG 120 IGTSPYNAMQ YGQLCGGVPA AAVTAAPHFL VDDADSGDDL FAIPRQMGLM ARGGESQHSY 180 TATDASQLSY QATVPGTTMP VFINGTVYDV PSTGALDVAG TFGSDVILVH SSGEILPVNE 240 RGVLMKSLQM GECYYLVFRS I |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_6669.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365174 | 0.0 | AK365174.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2031K13. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200216.1 | 1e-160 | WUSCHEL-related homeobox 10-like | ||||
Swissprot | Q6Z3L4 | 4e-90 | WOX10_ORYSJ; WUSCHEL-related homeobox 10 | ||||
TrEMBL | M0Y8G7 | 0.0 | M0Y8G7_HORVV; Uncharacterized protein | ||||
STRING | MLOC_6669.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1078 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03660.1 | 2e-29 | WUSCHEL related homeobox 11 |
Publications ? help Back to Top | |||
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