 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
MLOC_66577.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
Family |
MYB |
Protein Properties |
Length: 388aa MW: 41896.8 Da PI: 6.8327 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
MLOC_66577.1 | genome | IBSC | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 48.3 | 2.3e-15 | 32 | 79 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEde+lv + + G g+W+ +ar g+ R++k+c++rw +yl
MLOC_66577.1 32 KGLWSPEEDERLVAYMLRSGQGSWSDVARNAGLQRCGKSCRLRWINYL 79
678*******************************************97 PP
|
2 | Myb_DNA-binding | 50.8 | 3.7e-16 | 85 | 128 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg++++ E++l+v++++ lG++ W+ Ia++++ gRt++++k++w++
MLOC_66577.1 85 RGAFSPHEEDLIVNLHAILGNR-WSQIAARLP-GRTDNEIKNFWNS 128
89********************.*********.***********97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 388 aa
Download sequence Send
to blast |
MRKPVECPAT KCSGGVAPGN SNVAAAAAKL RKGLWSPEED ERLVAYMLRS GQGSWSDVAR 60 NAGLQRCGKS CRLRWINYLR PDLKRGAFSP HEEDLIVNLH AILGNRWSQI AARLPGRTDN 120 EIKNFWNSTI KKRLKMNSAA SSPATTECAS PPEPNLDGGS ASCLDLTSQE DGSHHAMKSM 180 WMDSSSSSSS SSSMQQGSRP STMAPAANRG YGGLLLPLPD QVCGVAPSTH TSLPPFFQDH 240 SSFKQVSPLR TGGYYPHGMA MEGAGGCFMG EEAVGGGGER SVVFNVPPLL EPMAVALQDQ 300 TLMASTGNSN NNHRNTNSTA EGTTLSSKNG CNINDDNTSK NNINSVVSYW EQHGQQQHMS 360 RNVVMGEWDL EELMKDVSCL PFLDFQVE
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY672068 | 0.0 | AY672068.1 Hordeum vulgare subsp. vulgare myb transcription factor mRNA, complete cds. |