PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_66350.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 252aa MW: 28292.5 Da PI: 5.6585 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.6 | 4.4e-18 | 68 | 121 | 4 | 56 |
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft+eq++ Le+ F+ ++ +e+++LA++lgL+ rqV +WFqN+Ra+++ MLOC_66350.2 68 KRRFTEEQVRSLESTFHArRAKLEPREKADLARELGLQPRQVAIWFQNKRARWR 121 458**************8899********************************9 PP | |||||||
2 | HD-ZIP_I/II | 119.8 | 1.4e-38 | 66 | 159 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 e+krr+++eqv++LE++F++++ kLep++K++lareLglqprqva+WFqn+RAR++tkqlE+d++ L+++ydal+++ ++L++e+ +L+++l+e MLOC_66350.2 66 ERKRRFTEEQVRSLESTFHARRaKLEPREKADLARELGLQPRQVAIWFQNKRARWRTKQLEQDFAELRAHYDALHARVQSLKQEKLTLAAQLEE 159 69*****************9999*******************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.05E-17 | 54 | 125 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.038 | 62 | 123 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-16 | 65 | 127 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.66E-16 | 67 | 124 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-18 | 68 | 129 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.7E-15 | 68 | 121 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 2.0E-6 | 94 | 103 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 98 | 121 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.0E-6 | 103 | 119 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.6E-12 | 123 | 164 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MSQVHALAIA CSSGVLSVTI RSRSRDGSEM ESDCQFLLPP PPRMYAAAGD DGQFLQQQQL 60 SGGGGERKRR FTEEQVRSLE STFHARRAKL EPREKADLAR ELGLQPRQVA IWFQNKRARW 120 RTKQLEQDFA ELRAHYDALH ARVQSLKQEK LTLAAQLEEL KKKLNERHDQ SASCGGSCAV 180 ADVDDKRNSF TSCAVEKDES AAPAGDVSDG STPGWYEYDD HLAYAVDLHE PFCATPELWE 240 TSWPLVEWNS VA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_66350.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367456 | 0.0 | AK367456.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2057H16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020152926.1 | 1e-148 | homeobox-leucine zipper protein HOX24-like | ||||
Refseq | XP_020173935.1 | 1e-148 | homeobox-leucine zipper protein HOX24-like | ||||
Swissprot | A2X7U1 | 6e-86 | HOX24_ORYSI; Homeobox-leucine zipper protein HOX24 | ||||
TrEMBL | A0A287UDM5 | 0.0 | A0A287UDM5_HORVV; Uncharacterized protein | ||||
STRING | MLOC_66350.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4027 | 31 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.2 | 4e-28 | homeobox 7 |