PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_66348.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 337aa MW: 37691.2 Da PI: 5.7209 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.2 | 3.9e-50 | 38 | 169 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 pG+rFhPtdeelv++yL++kv++k+l++ evi+e+diyk++PwdLp +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s+ MLOC_66348.1 38 LPGYRFHPTDEELVTFYLRRKVARKSLRI-EVIREIDIYKHDPWDLPkASTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIYSAaa 133 69***************************.99***************445556889**************************************988 PP NAM 96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g +glkk+Lv+y+g+a kg+ktdW+mhe+rl MLOC_66348.1 134 graSGVSIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 169 7777777***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 54.309 | 37 | 198 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.62E-55 | 37 | 197 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.9E-25 | 39 | 169 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005992 | Biological Process | trehalose biosynthetic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006561 | Biological Process | proline biosynthetic process | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MVAKADMTVM EMEKATSDGE VVLGGAGDDD DEEEDVVLPG YRFHPTDEEL VTFYLRRKVA 60 RKSLRIEVIR EIDIYKHDPW DLPKASTVGG EKEWYFFCLR GRKYRNSIRP NRVTGSGFWK 120 ATGIDRPIYS AAAGRASGVS IGLKKSLVYY RGSAGKGTKT DWMMHEFRLP PAAAAAATNS 180 SPSMQEAEVW TICRIFRRTI TYRKQQQQPW RPAPAVSAAD SSSNTGSFES SEVSDEYINC 240 LQAPAAAAPC IPEQHQYVSQ TGTVDSGNYF YMDTMHNQQQ VQGQWNAPPA APVPEHKPQS 300 QLSAANDFYK VEGYLEEIAR MMEVTDPAGF YDCRSYA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-48 | 23 | 204 | 1 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00310 | DAP | Transfer from AT2G43000 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_66348.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK374728 | 0.0 | AK374728.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3074N05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020195561.1 | 0.0 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 5e-89 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | M0Y729 | 0.0 | M0Y729_HORVV; Uncharacterized protein | ||||
STRING | MLOC_66348.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 3e-80 | NAC domain containing protein 42 |