PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_6586.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 667aa    MW: 74824.1 Da    PI: 8.9388
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_6586.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.7e-08476517240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W +eE ell +a++++++g   +W+ +++ +g+gR+ +++
      MLOC_6586.1 476 KPWGKEEIELLRKAIQKYPKGtsrRWEVVSEFIGTGRSVEEI 517
                      69***********************************99876 PP
2Myb_DNA-binding21.84.4e-07610653243
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      ++W++   + lv+a k ++++   +W+++a  ++ g+t  qck +
      MLOC_6586.1 610 DAWSEAQVLALVQALKAFPKDanqRWERVATAVP-GKTVVQCKKK 653
                      58********************************.********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1109.5E-2194199IPR001623DnaJ domain
SuperFamilySSF465658.24E-2095176IPR001623DnaJ domain
SMARTSM002711.7E-1597172IPR001623DnaJ domain
PfamPF002266.6E-1898177IPR001623DnaJ domain
CDDcd062573.33E-1398169IPR001623DnaJ domain
PROSITE profilePS5007618.15198180IPR001623DnaJ domain
PRINTSPR006251.2E-8103121IPR001623DnaJ domain
PRINTSPR006251.2E-8121136IPR001623DnaJ domain
PRINTSPR006251.2E-8152172IPR001623DnaJ domain
PROSITE patternPS006360157176IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.179470525IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.2E-5471517IPR009057Homeodomain-like
SuperFamilySSF466891.5E-7472518IPR009057Homeodomain-like
SMARTSM007171.4E-6474527IPR001005SANT/Myb domain
PfamPF002491.0E-6476517IPR001005SANT/Myb domain
CDDcd001672.99E-5477517No hitNo description
SMARTSM007176.6E-6608660IPR001005SANT/Myb domain
SuperFamilySSF466891.35E-7609654IPR009057Homeodomain-like
PfamPF002491.8E-5611653IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-4611653IPR009057Homeodomain-like
CDDcd001675.16E-5611653No hitNo description
PROSITE profilePS500906.144612658IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MGSKRSCLLI TYSPEIVDGV PLYVSSNCLP VKASKYEPAG HSFHAVALKL RGLDEKEDTE  60
TDDRSVSSDD KSQDFSAGSD NFSSKGKKKS GSGSQQQDHY ALLGLGNLRF LATEDQIRKS  120
YRDMALKHHP DKQAALLLHE TTEAAKQAKK DEIESHFKAI QEAYEVLMDP TKRRIFDSTD  180
EFDDDIPTDC APQDFFKVFG PAFMRNGRWS VSQPIPSLGD DSTPVVDVDQ FYNFWYNFKS  240
WREFPHEDEY DLEQAESREH KRWMERQNAK IQEKAKKVEY TRVRNLVDNA YRKDPRIQRR  300
KEEEKAEKQR RKEAKYMAKK LQEEEAARAA EEERKRKEEE AKVAAAAALN QKKLKEKEKK  360
LLRKEKSRLR TLVAPVVAEP SFSLSADDVE TVCTSHDVEH LKKLCDIMED KDTAEKARLL  420
RGALNKEENS SNTSKEEKIH ANGVAGSTPK STAPQGPPKS TAPQVITLGN YEKKEKPWGK  480
EEIELLRKAI QKYPKGTSRR WEVVSEFIGT GRSVEEILKA TKTVLLQKPD STKAFDSFLE  540
KRKAAPSIVS PLSTRDGTEP SKPAGGSTLG AGSEPSKAAE QPAASSSQTA NEKTGADPVP  600
EEAPSATDPD AWSEAQVLAL VQALKAFPKD ANQRWERVAT AVPGKTVVQC KKKVSSMRSN  660
FRTKKAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A6e-1919429820124Zuotin
5dje_B6e-1919429820124Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333354RKRKEEEAKVAAAAALNQKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_6586.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178667.10.0dnaJ homolog subfamily C member 2
RefseqXP_020178668.10.0dnaJ homolog subfamily C member 2
RefseqXP_020178669.10.0dnaJ homolog subfamily C member 2
TrEMBLM0Y5F80.0M0Y5F8_HORVV; Uncharacterized protein
STRINGMLOC_6586.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06110.20.0DnaJ domain ;Myb-like DNA-binding domain