PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65829.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 705aa    MW: 76369.4 Da    PI: 5.4346
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65829.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.51.5e-2044100157
                   TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
      Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                   +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  MLOC_65829.1  44 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 100
                   688999************************************************995 PP
2START187.66.4e-592214401206
                   HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
         START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                   ela +a++el+++a +++p+W + +     ++++e+ + f + ++          +ea+r+ +vv+m++a lve+l+d++ q+   +     +a+tl
  MLOC_65829.1 221 ELAVAAMEELLRMARLDDPLWATTVdqtLALDEEEYARMFIDPRGglgpkqygLVSEASRDATVVIMTPASLVEILMDVN-QYAAVFSsivsRAATL 316
                   57899********************8776678888888886666679*********************************.66666655555***** PP

                   EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
         START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172
                   ev+s+g      galq+m+ e+q++splvp R+++fvRy+++  +g w++vdvS+d  q +       +++++pSg+li++ +ng+skvtwvehv++
  MLOC_65829.1 317 EVLSTGvagcydGALQVMSVEFQVPSPLVPtRESYFVRYCKRNADGAWAVVDVSLDGLQGV-------KCRRRPSGCLIQEAPNGYSKVTWVEHVEV 406
                   ********************************************************99985.......699************************** PP

                   -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
         START 173 kgrlphwllrslvksglaegaktwvatlqrqcek 206
                   ++r++h+++++lv+sgla+ga++wv  l+rqce+
  MLOC_65829.1 407 DDRSVHNIYKPLVGSGLAFGARRWVGVLGRQCER 440
                   ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-223099IPR009057Homeodomain-like
SuperFamilySSF466898.77E-2034101IPR009057Homeodomain-like
PROSITE profilePS5007117.0741101IPR001356Homeobox domain
SMARTSM003892.3E-2042105IPR001356Homeobox domain
CDDcd000861.09E-1943102No hitNo description
PfamPF000465.6E-184499IPR001356Homeobox domain
PROSITE patternPS0002707699IPR017970Homeobox, conserved site
PROSITE profilePS5084837.884212443IPR002913START domain
CDDcd088752.43E-109218439No hitNo description
SuperFamilySSF559613.36E-32219442No hitNo description
SMARTSM002345.7E-52221440IPR002913START domain
PfamPF018522.2E-50222440IPR002913START domain
Gene3DG3DSA:3.30.530.203.4E-4283406IPR023393START-like domain
SuperFamilySSF559616.72E-24461692No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MIRGRESMDP LGDEFESRSG SENVDGDAVD NAEQDQDPNQ RPRKKRYHRH TQHQIQEMEA  60
FFKECPHPDD KQRKELSREL GLEPLQVKFW FQNKRTQMKN QHERHENSQL RADNDKLRAE  120
NMRYKEALSS ASCPNCGGPA ALGEMSFDEH HLRVENARLR DEIDRISAIA AKYVGKPMVP  180
FPVLSSPLAA APGASAYDVF AGAASVLQAP PDDKQQGVVV ELAVAAMEEL LRMARLDDPL  240
WATTVDQTLA LDEEEYARMF IDPRGGLGPK QYGLVSEASR DATVVIMTPA SLVEILMDVN  300
QYAAVFSSIV SRAATLEVLS TGVAGCYDGA LQVMSVEFQV PSPLVPTRES YFVRYCKRNA  360
DGAWAVVDVS LDGLQGVKCR RRPSGCLIQE APNGYSKVTW VEHVEVDDRS VHNIYKPLVG  420
SGLAFGARRW VGVLGRQCER LASAMASNIP TSDIGVITSS EGRKSMLKLA ERMVASFCGG  480
VTASVAHQWT TLSGSGAEDV RVMTRKSVDD PGRPPGIVLN AATSFWLPVP PKRVFDFLRD  540
ETSRSEWDIL SNGGIVQEMA HIANGRDHGN CVSLLRVNST NSNQSNMLIL QESCTDASGS  600
YVIYAPVDVV AMNVVLNGGD PDYVALLPSG FAILPDGPAG TMHAAAGATG TGGSLLTVAF  660
QILVDSVPTA KLSLGSVATV NSLIACTVER IKTAVISNGG ASPPQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65829.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3619710.0AK361971.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001J17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199198.10.0homeobox-leucine zipper protein ROC2-like
SwissprotQ0J9X20.0ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLM0Y5B40.0M0Y5B4_HORVV; Uncharacterized protein
STRINGMLOC_65829.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]