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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_65745.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | WOX | ||||||||
Protein Properties | Length: 314aa MW: 32417.1 Da PI: 7.0582 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47.7 | 2.7e-15 | 33 | 93 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ MLOC_65745.2 33 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLerfgAVGDANVFYWFQNRRSRSRR 93 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 106.9 | 1.2e-34 | 32 | 95 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q MLOC_65745.2 32 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 95 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.97E-14 | 26 | 101 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.256 | 29 | 94 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-6 | 31 | 98 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.0E-13 | 33 | 93 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-8 | 33 | 100 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MEGSSNSPDG QSSGGSPEER RSSGGRGPGE PVRSRWTPKP EQILILESIF NSGMVNPPKD 60 ETVRIRKLLE RFGAVGDANV FYWFQNRRSR SRRRQRQMQA AAAAAAAAAS ASSVAASSMP 120 AATSTTIGLP SGTGSVHPMA IGGAASQYEQ RATSSSSSGS TGGSSLGLLA HGAGVSGAGV 180 GYLQASCETS SPLASGLMGD VDSSGGGDDL FAISRQMGFA GPSSTAPSTA VQQQYYPCQL 240 PAATITVFIN GVPMEVPRGP IDLRAMFGQD VVLLHSTGAL LPVNDYGILI QSLQMGESYF 300 LVTIHITSQE HSSS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00330 | DAP | Transfer from AT3G03660 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_65745.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT018488 | 1e-113 | BT018488.1 Zea mays clone EL01N0424F07.d mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164667.1 | 1e-146 | WUSCHEL-related homeobox 6-like | ||||
Swissprot | A2XG77 | 1e-106 | WOX6_ORYSI; WUSCHEL-related homeobox 6 | ||||
Swissprot | Q10M29 | 1e-106 | WOX6_ORYSJ; WUSCHEL-related homeobox 6 | ||||
TrEMBL | M0Y4Z1 | 0.0 | M0Y4Z1_HORVV; Uncharacterized protein | ||||
STRING | MLOC_65745.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1078 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17810.2 | 1e-29 | WUSCHEL related homeobox 12 |
Publications ? help Back to Top | |||
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