PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65745.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WOX
Protein Properties Length: 306aa    MW: 31581.2 Da    PI: 8.2065
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65745.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.72.6e-153393257
                  T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
      Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                  r+R+t+++eq+ +Le+ F++   +p ++e  ++ k l     + +++V++WFqNrR + ++
  MLOC_65745.1 33 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLerfgAVGDANVFYWFQNRRSRSRR 93
                  89*****************99*************************************997 PP
2Wus_type_Homeobox1071.2e-343295265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R+r++q
       MLOC_65745.1 32 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRSRRRQ 95
                       589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-1426101IPR009057Homeodomain-like
PROSITE profilePS5007111.2562994IPR001356Homeobox domain
SMARTSM003891.2E-63198IPR001356Homeobox domain
PfamPF000464.8E-133393IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-833100IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048830Biological Processadventitious root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEGSSNSPDG QSSGGSPEER RSSGGRGPGE PVRSRWTPKP EQILILESIF NSGMVNPPKD  60
ETVRIRKLLE RFGAVGDANV FYWFQNRRSR SRRRQRQMQA AAAAAAAAAS ASSVAASSMP  120
AATSTTIGLP SGTGSVHPMA IGGAASQYEQ RATSSSSSGS TGGSSLGLLA HGAGVSGAGV  180
GYLQASCETS SPLASGLMGD VDSSGGGDDL FAISRQMGFA GPSSTAPSTA VQQQYYPCQL  240
PAATITVFIN GVPMEVPRGP IDLRAMFGQD VVLLHSTGAL LPVNDYGILI QSLQMGESYF  300
LVSRQT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00330DAPTransfer from AT3G03660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65745.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0184881e-113BT018488.1 Zea mays clone EL01N0424F07.d mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164667.11e-148WUSCHEL-related homeobox 6-like
SwissprotA2XG771e-107WOX6_ORYSI; WUSCHEL-related homeobox 6
TrEMBLM0Y4Z00.0M0Y4Z0_HORVV; Uncharacterized protein
STRINGMLOC_65745.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17810.28e-30WUSCHEL related homeobox 12