PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_65714.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

NAC

Protein Properties

Length: 235aa MW: 26289.7 Da PI: 5.7357

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_65714.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	171.8	2.1e-53	19	149	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 lp+GfrFhPtdee+v++yL++k++++ ++ v+++v+i+++ePwdLp+ +k +ekew+fF+++d+ky+tg+r+nrat+sgyWkatgkdke+++ MLOC_65714.1 19 LPRGFRFHPTDEEVVTYYLTPKISNSYSSV-LVVPDVNINNTEPWDLPSLAKMGEKEWFFFVHKDRKYPTGTRTNRATRSGYWKATGKDKEIYRGkg 114 799**********************998.78***********8888899**********************************9855 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129 + l+g+kktLvfy grap+gekt+Wvmheyrle MLOC_65714.1 115 rGAVLIGMKKTLVFYLGRAPSGEKTSWVMHEYRLE 149 45556**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-60	16	172	IPR003441	NAC domain
PROSITE profile	PS51005	57.154	19	172	IPR003441	NAC domain
Pfam	PF02365	6.1E-29	20	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MSDVTAVMGL RGEEPQLVLP RGFRFHPTDE EVVTYYLTPK ISNSYSSVLV VPDVNINNTE 60 PWDLPSLAKM GEKEWFFFVH KDRKYPTGTR TNRATRSGYW KATGKDKEIY RGKGRGAVLI 120 GMKKTLVFYL GRAPSGEKTS WVMHEYRLEG QLPHRLPRSA KDDWAVCRLF NKDSAANNAP 180 QMAPAADGGM EEEDPFAFLD EIFNSDDLLN NADLPILMDS PSGAVDFAGA PAPQQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-50	8	178	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-50	8	178	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-50	8	178	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-50	8	178	4	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-50	8	178	7	174	NAC domain-containing protein 19
3swm_B	2e-50	8	178	7	174	NAC domain-containing protein 19
3swm_C	2e-50	8	178	7	174	NAC domain-containing protein 19
3swm_D	2e-50	8	178	7	174	NAC domain-containing protein 19
3swp_A	2e-50	8	178	7	174	NAC domain-containing protein 19
3swp_B	2e-50	8	178	7	174	NAC domain-containing protein 19
3swp_C	2e-50	8	178	7	174	NAC domain-containing protein 19
3swp_D	2e-50	8	178	7	174	NAC domain-containing protein 19
4dul_A	2e-50	8	178	4	171	NAC domain-containing protein 19
4dul_B	2e-50	8	178	4	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_65714.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ010830	1e-164	AJ010830.1 Triticum sp. mRNA for GRAB2 protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020166614.1	1e-139	NAC domain-containing protein 79-like
Swissprot	Q9FK44	2e-76	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	M0Y4W2	1e-175	M0Y4W2_HORVV; Uncharacterized protein
STRING	MLOC_65714.1	1e-176	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1862	38	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	2e-77	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]