PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65463.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 296aa    MW: 32892.1 Da    PI: 8.1758
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65463.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.91.4e-1654100455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    hn  E+rRR +iN+++  L++l+P++      K +Ka++L  A+eY+k+Lq
  MLOC_65463.1  54 VHNLSEKRRRCKINEKMKALQSLVPNS-----SKTDKASMLDDAIEYLKHLQ 100
                   6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.3E-2048112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-2148118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.0315099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-1653104No hitNo description
PfamPF000103.3E-1454100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-1956105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MDQEHLEFIM RHHAHQGGMG FVPADRGDSE EALGSSESEP AGRPRGKRAR AAEVHNLSEK  60
RRRCKINEKM KALQSLVPNS SKTDKASMLD DAIEYLKHLQ LQVQMLSMRN GVYRPSVNLP  120
GPPDHLPTSQ MCAALNQNSV DASSNPPAAM LPMNHFLGAM SGSRHPFGPP NQDRPRHDPL  180
VLSSVPCTIT REPPFLLGTS QESHLRSLQL TVSAEMIFQE EAMLKQRLSS TQETTSLPAH  240
EMKPVRQEAG HFDTSSIWKN QSQNMLPSNP ESALFVPHLR RFQNSNADSG LRAESK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65463.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3606560.0AK360656.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1122L11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165312.10.0transcription factor SPATULA-like isoform X1
TrEMBLM0Y3U60.0M0Y3U6_HORVV; Uncharacterized protein
STRINGMLOC_65463.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.16e-30bHLH family protein