 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
MLOC_65462.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 180aa MW: 19914.4 Da PI: 8.9651 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MLOC_65462.1 | genome | IBSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61.8 | 1e-19 | 79 | 133 | 3 | 56 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++++t+eq+++Le+ Fe+ +r++ e++ eLA++lg+ rqV vWFqNrRa++k
MLOC_65462.1 79 RKRRLTAEQVRALERSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 133
45589*************98**********************************9 PP
|
| 2 | HD-ZIP_I/II | 122.5 | 2.1e-39 | 78 | 169 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
e+krrl++eqv++LE+sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+k+kqlE+d++aL++a+ +l + +++L +++++Lr+++
MLOC_65462.1 78 ERKRRLTAEQVRALERSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKAKQLEQDFDALRAAHAELLAGRDALLADNHHLRSQV 169
69*****************9999******************************************************************997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 180 aa
Download sequence Send
to blast |
MDSGRLIFGS AAPSRAAGAG GGQMMLFGGS GSLLGGSPVV AGVEDGRRKR PFLTSPEEEL 60
QLDDEMYGYY GLDENAPERK RRLTAEQVRA LERSFEEEKR KLEPERKSEL ARRLGIAPRQ 120
VAVWFQNRRA RWKAKQLEQD FDALRAAHAE LLAGRDALLA DNHHLRSQVI NPATASSSPD
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 77 | 82 | ERKRRL |
| 2 | 127 | 135 | RRARWKAKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK356850 | 0.0 | AK356850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041A16. |
