PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65318.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 440aa    MW: 47545.8 Da    PI: 5.7534
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65318.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.27.1e-09274322355
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  MLOC_65318.2 274 NSHSLAERVRREKISERMKFLQDLVPGC----SKVIGKAVMLDEIINYVQSLQ 322
                   58*************************9....566*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.11E-10269326No hitNo description
SuperFamilySSF474591.23E-16269339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.205271321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-6274322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-16274336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-9277327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
METNEKNAAE LEEKNQPSGH DQQPSFHGPG FSLSPEAQMD SSTSALAAMG NPFPPGLWNP  60
PGQNFGLGEA NTNAMLNGHQ FSSFLGMLSA ATPAYPGAPS GFMDCGTGFP GLSANSLGAM  120
MDHPFSRNPP MGSFQNDIET SREMNVDEGC KDALLTGDRQ QGDTESSHGV DASSKELSKP  180
ECSGGAGQDE GPSVSCPKKR KRPSQDRGVK NVQEGSQQLA TLAAKQEKDD GDKDEPKRPI  240
VTSRKSNGKQ TEDKSDAPKE DYIHIRARSG QATNSHSLAE RVRREKISER MKFLQDLVPG  300
CSKVIGKAVM LDEIINYVQS LQRQVEFLSM KLSAVNPALD FNIERILSKD LFQSQGTASS  360
TFGFLPDIGH QFLHPPKHSQ AALHSIVNPA DAFGRVTNAP VGCTFKEATH QVPNNFDGEF  420
HNVIGMPFTL FNDQESNGKP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196202PKKRKRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65318.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3691070.0AK369107.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2085G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151883.10.0transcription factor bHLH49-like
TrEMBLM0Y3B40.0M0Y3B4_HORVV; Uncharacterized protein
STRINGMLOC_65318.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP146241923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.21e-65bHLH family protein