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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_64708.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | B3 | ||||||||
Protein Properties | Length: 1279aa MW: 145977 Da PI: 9.4541 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 67.6 | 1.7e-21 | 1047 | 1144 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr 87 f++vlt+ dv+ ++rlv+pkk+ae++ + + + + l++ed+ g+sW + ++yr +s+ yv+ kGW +Fvk++ L++gD+v F++ g+ MLOC_64708.10 1047 FDTVLTRGDVGMLNRLVVPKKHAEKYfpldssSTRTSKAIVLSFEDPAGKSWFFHYSYRSSSQNYVMFKGWTGFVKEKFLEAGDTVSFSRGvGE 1140 8899*************************977555557788999********************************************954355 PP .SEE CS B3 88 .sef 90 +++ MLOC_64708.10 1141 aTRG 1144 4555 PP | |||||||
2 | B3 | 30.8 | 5.1e-10 | 1158 | 1249 | 1 | 91 |
EEEE-..-HHHHT.T-EE--HHH.HTT....---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh....ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+ vlt sd+ + + l++p + + h + +k ++ l++ed sg ++W +++ sg+y+l kG + Fv++ +L +g +v F++ g MLOC_64708.10 1158 FERVLTASDMESDgCSLMVPVNLVWPHpglrKTIKGRHAVLQFEDGSGngKVWPFQF---EASGQYYLMKGLNYFVNDRDLAAGYTVSFYRAG- 1247 7889999999999899************8887777789999999987788*******...7778999999********************544. PP SEE. CS B3 88 sefe 91 ++ MLOC_64708.10 1248 --TR 1249 ..44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52540 | 6.45E-50 | 207 | 471 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Gene3D | G3DSA:3.40.50.300 | 2.2E-16 | 213 | 364 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00931 | 3.0E-47 | 228 | 498 | IPR002182 | NB-ARC |
PRINTS | PR00364 | 5.7E-12 | 233 | 248 | No hit | No description |
PRINTS | PR00364 | 5.7E-12 | 306 | 320 | No hit | No description |
PRINTS | PR00364 | 5.7E-12 | 403 | 417 | No hit | No description |
SuperFamily | SSF52058 | 7.48E-18 | 541 | 910 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 2.0E-6 | 611 | 740 | IPR032675 | Leucine-rich repeat domain, L domain-like |
PRINTS | PR00364 | 5.7E-12 | 666 | 682 | No hit | No description |
Gene3D | G3DSA:3.80.10.10 | 2.0E-6 | 811 | 851 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:2.40.330.10 | 5.2E-28 | 1038 | 1152 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.55E-22 | 1043 | 1137 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.46E-20 | 1045 | 1136 | No hit | No description |
PROSITE profile | PS50863 | 12.746 | 1047 | 1152 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.2E-19 | 1047 | 1148 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.9E-17 | 1047 | 1145 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.66E-11 | 1153 | 1251 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-12 | 1153 | 1250 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.65E-8 | 1157 | 1252 | No hit | No description |
SMART | SM01019 | 0.013 | 1158 | 1259 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 6.964 | 1198 | 1258 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0043531 | Molecular Function | ADP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1279 aa Download sequence Send to blast |
MLFDSSVSAS LGTMRPLVKK LDMLLAPARG YSTLCKRIKE VMHLLKHDVE EISSYLDELT 60 EVEDPPPMAK CWMNEARDLS YDMEDYIDSL LFVPPGHFIK KKKKKKKKGK KKMVIKKRLK 120 WCKQIVFTKQ VSDHGIKTSK IIHVNVPRLP NKPKVAKIIL QFRIYVQEAI ERYDKYRLHH 180 CSTLRRRLLS TGSMLSVPIP YEEAAQIVTD GRMNEFISSL AANNAADQQQ LKVVSVLGSG 240 CLGKTTLANV LYDRIGMQFE CRAFIRVSKK PDMKRLFRDL LSQFHQKQPL PTSCNELGIS 300 DNIIKHLQDK RYLIVIDDLW DLSVWDIIKY AFPKGNHGSR IIITTQIEDV ALTCCCDHSE 360 HVFEMKPLNI GHSRELFFNR LFGSESDCLE EFKRVSNEIV DICGGLPLAT INIASHLANQ 420 ETEVSLDLLT DTRDLLRSCL WSNSTSERTK QVLNLSYSNL PDYLKTCLLY LHMYPVGSII 480 WKDDLVKQLV AEGFIATREG KDQDQEMIEK AAGLCFDALI DRRFIQPIYT KYNNKVLSCT 540 VHEVVHDLIA QKSAEENFIV VADHNRKNIA LSHKVRRLSL IFGDTIYAKT PANITKSQIR 600 SFRFFGLFEC MPCITEFKVL RVLNLQLSGH RGDNDPIDLT GISELFQLRY LKITSDVCIK 660 LPNQMQKLQY LETLDIMDAP RVTAVPWDII NLPHLLHLTL PVDTYLLDWI SSMTDSVISL 720 WTLGKLNYLQ HLHLTSSSTR PSYHLERSVE ALGYLIGGHG KLKTIVVAHV SSAQNTVVRG 780 APEVTISWDR MSPPPLLQRF ECPHSCFIFY RIPKWVTELG NLCILKIAVK ELHMICLGTL 840 RGLHALTDLS LYVETAPIDK IIFDKAGFSV LKYCKLRFAA GIAWLKFEAD AMPSLWKLML 900 VFNAIPRMDQ NLVFFHHSRP AMHQRGGAVI IVEHMPGLRV ISAKFGGAAS DLEYASRTVV 960 SNHPSNPTIN MQLVCYSSNG KRSRKRKQQP YDVVKGQPDE YAKRLERPAE KRISTPTKSS 1020 LRLHVPEITP KPMQITDNNV QRREHMFDTV LTRGDVGMLN RLVVPKKHAE KYFPLDSSST 1080 RTSKAIVLSF EDPAGKSWFF HYSYRSSSQN YVMFKGWTGF VKEKFLEAGD TVSFSRGVGE 1140 ATRGRLFIDC QNEQRYMFER VLTASDMESD GCSLMVPVNL VWPHPGLRKT IKGRHAVLQF 1200 EDGSGNGKVW PFQFEASGQY YLMKGLNYFV NDRDLAAGYT VSFYRAGTRL FVDSGRKDDK 1260 VALGTRSRER IYPKIVRSQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 5e-37 | 1043 | 1151 | 4 | 111 | B3 domain-containing transcription factor NGA1 |
5os9_B | 5e-37 | 1043 | 1151 | 4 | 111 | B3 domain-containing transcription factor NGA1 |
6j5t_C | 1e-34 | 226 | 675 | 177 | 616 | Disease resistance RPP13-like protein 4 |
6j5t_F | 1e-34 | 226 | 675 | 177 | 616 | Disease resistance RPP13-like protein 4 |
6j5t_G | 1e-34 | 226 | 675 | 177 | 616 | Disease resistance RPP13-like protein 4 |
6j5t_L | 1e-34 | 226 | 675 | 177 | 616 | Disease resistance RPP13-like protein 4 |
6j5t_O | 1e-34 | 226 | 675 | 177 | 616 | Disease resistance RPP13-like protein 4 |
6j5u_A | 1e-34 | 226 | 675 | 177 | 616 | Disease resistance RPP13-like protein 4 |
6j5v_A | 1e-34 | 226 | 675 | 177 | 616 | Disease resistance RPP13-like protein 4 |
6j5w_A | 1e-34 | 226 | 675 | 177 | 616 | Disease resistance RPP13-like protein 4 |
6j6i_C | 1e-34 | 226 | 675 | 177 | 616 | Disease resistance RPP13-like protein 4 |
6j6i_F | 1e-34 | 226 | 675 | 177 | 616 | Disease resistance RPP13-like protein 4 |
6j6i_G | 1e-34 | 226 | 675 | 177 | 616 | Disease resistance RPP13-like protein 4 |
6j6i_L | 1e-34 | 226 | 675 | 177 | 616 | Disease resistance RPP13-like protein 4 |
6j6i_O | 1e-34 | 226 | 675 | 177 | 616 | Disease resistance RPP13-like protein 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 101 | 107 | KKKKKKK |
2 | 102 | 110 | KKKKKKGKK |
3 | 102 | 111 | KKKKKKGKKK |
4 | 103 | 117 | KKKKKGKKKMVIKKR |
5 | 980 | 987 | KRSRKRKQ |
6 | 982 | 987 | SRKRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_64708.10 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369251 | 0.0 | AK369251.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2087M16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020199675.1 | 0.0 | putative disease resistance RPP13-like protein 2 | ||||
TrEMBL | A0A287SZS2 | 0.0 | A0A287SZS2_HORVV; Uncharacterized protein | ||||
STRING | MLOC_64708.5 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8320 | 7 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 3e-37 | B3 family protein |