PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_64376.5

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Protein Properties

Length: 272aa MW: 30452.9 Da PI: 9.8012

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_64376.5	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	31.4	3.4e-10	51	146	3	96
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE........EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg..rsWevkliy......rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 ++++s+v ++++lv+ k++a eh ++ t+++ ++ g + W+ ++++ + +++ +l+ +F+++n+++egD+++F+ + + +++ MLOC_64376.5 51 VQMKKSNVKRHANLVIRKDYALEHFP---REYTIVILQLPGknKDWKGTFRIrpsgmsDAGRCNLYLG----NFARDNHVREGDICLFQPMTNvKQR 140 68999*****************63...345677777655569999999885544444444446666....***************99888999 PP ..EEEE CS B3 91 elvvkv 96 +++vkv MLOC_64376.5 141 RFLVKV 146 999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.1E-12	41	161	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.65E-11	44	151	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.13E-9	49	131	No hit	No description
Pfam	PF02362	7.2E-8	50	146	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MSNPCDSDGS QKERSFSSDE ASVQCYLTKA QKVKIAAIIE KIQSKITVLV VQMKKSNVKR 60 HANLVIRKDY ALEHFPREYT IVILQLPGKN KDWKGTFRIR PSGMSDAGRC NLYLGNFARD 120 NHVREGDICL FQPMTNVKQR RFLVKVHILH KVSIDGTTQS SARKRPDSDG CLKEDSSHNY 180 KSANTPAVSY TSKEFSEENP AADEVMELDD LQTLSKDYVL SGKCDLTVAQ GAKINALVDK 240 IRPQIPVLVV QMKKSSSTNG AILTIKKDYA IK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_64376.5

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK251585	0.0	AK251585.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf123m20, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020198704.1	1e-160	B3 domain-containing protein Os03g0620400-like
TrEMBL	A0A287MJJ6	0.0	A0A287MJJ6_HORVV; Uncharacterized protein
TrEMBL	A0A287MJL8	0.0	A0A287MJL8_HORVV; Uncharacterized protein
STRING	MLOC_64376.1	0.0	(Hordeum vulgare)