 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
MLOC_64242.2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
| Family |
LSD |
| Protein Properties |
Length: 223aa MW: 23424.3 Da PI: 8.3894 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MLOC_64242.2 | genome | IBSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 40.1 | 6e-13 | 51 | 75 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C+gCr +L YPrGApsV+Ca+C++V
MLOC_64242.2 51 CHGCRSVLLYPRGAPSVCCAVCHAV 75
************************9 PP
|
| 2 | zf-LSD1 | 42.2 | 1.3e-13 | 90 | 114 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
C gCrtlL+Y+r+A+ VRC++CdtV
MLOC_64242.2 90 CVGCRTLLMYTRNATTVRCSCCDTV 114
************************9 PP
|
| 3 | zf-LSD1 | 48.5 | 1.4e-15 | 131 | 155 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
Cg+C+t+L+YP+GA+sV+Ca+C+++
MLOC_64242.2 131 CGQCQTVLMYPYGASSVKCAICNFI 155
***********************86 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0000303 | Biological Process | response to superoxide |
| GO:0001666 | Biological Process | response to hypoxia |
| GO:0002240 | Biological Process | response to molecule of oomycetes origin |
| GO:0009626 | Biological Process | plant-type hypersensitive response |
| GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway |
| GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway |
| GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process |
| GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process |
| GO:0010618 | Biological Process | aerenchyma formation |
| GO:0043069 | Biological Process | negative regulation of programmed cell death |
| Sequence ? help Back to Top |
| Protein Sequence Length: 223 aa
Download sequence Send
to blast |
MEQGADTRWA IGFGWSSGQS VIGLVCEKLS VLPRPDGPGR IFAGMQSQIV CHGCRSVLLY 60
PRGAPSVCCA VCHAVTSAPP PGMEMAQLIC VGCRTLLMYT RNATTVRCSC CDTVNLARPA 120
PPVNSIAHVN CGQCQTVLMY PYGASSVKCA ICNFITNIGM NTMRPLPATM HAPNGISYSV 180
PSTSAPSTQS QNVTVVVENP MTVDDKGKLV SNVVVGVTTG GKK
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK359579 | 0.0 | AK359579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1099G04. |
| GenBank | EU545233 | 0.0 | EU545233.1 Hordeum vulgare subsp. vulgare clone CEa0008p08 LSD1-like protein mRNA, complete cds. |
