PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64018.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 164aa    MW: 17924.8 Da    PI: 7.7407
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64018.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.3e-07135162330
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
           HLH   3 rahnerErrRRdriNsafeeLrellPka 30 
                    +h+ +Er RR++iN+++  L++l+P +
  MLOC_64018.5 135 NNHSLAERFRREKINERMKHLQDLVPGC 162
                   58************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-9130163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-5130164No hitNo description
PROSITE profilePS5088811.82132164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-5135162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-9135162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MYSPPCTAPG SNGERSFASG AANPLALLDH AMDFDEHVLF PMHNAGMQDG VQFYNHTAGG  60
SGTELSRNMS MEKGLKGGKR KGSGEGSSTM HSQEETGAMS RREASMERAG EKEGDAASNR  120
EDYVHIRAKR GQATNNHSLA ERFRREKINE RMKHLQDLVP GCNK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64018.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159248.14e-93transcription factor bHLH76-like isoform X4
SwissprotQ84T081e-19BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A287NUW71e-118A0A287NUW7_HORVV; Uncharacterized protein
TrEMBLM0XXT51e-116M0XXT5_HORVV; Uncharacterized protein
STRINGMLOC_64018.11e-117(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-21bHLH family protein
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]