PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_63964.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 343aa    MW: 37281.9 Da    PI: 8.5853
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_63964.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-1765110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+W++eEd  l ++v+++G ++W++I r ++ gR++k+c++rw + 
     MLOC_63964.1  65 RGPWSPEEDGALRRLVERHGARNWTAIGRGVP-GRSGKSCRLRWCNQ 110
                      89******************************.***********985 PP
2Myb_DNA-binding51.32.7e-16117159145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r ++T+eEd  +++a+++lG++ W++Iar +  gRt++ +k++w+
     MLOC_63964.1 117 RRPFTAEEDAAIARAHARLGNR-WAAIARLLR-GRTDNAVKNHWN 159
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.14360115IPR017930Myb domain
SuperFamilySSF466891.46E-2962158IPR009057Homeodomain-like
SMARTSM007171.0E-1464113IPR001005SANT/Myb domain
PfamPF002497.3E-1765110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2366117IPR009057Homeodomain-like
CDDcd001673.76E-1467109No hitNo description
SMARTSM007171.3E-14116164IPR001005SANT/Myb domain
PfamPF002496.2E-14117159IPR001005SANT/Myb domain
PROSITE profilePS5129417.501117166IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-21118166IPR009057Homeodomain-like
CDDcd001673.08E-11119159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGPRAASCCC RPHHRLQVVQ IPPPISSPPT TTTTARLAAV HFNRSSQPAS QADRSIVMEG  60
CDRIRGPWSP EEDGALRRLV ERHGARNWTA IGRGVPGRSG KSCRLRWCNQ LSPGVERRPF  120
TAEEDAAIAR AHARLGNRWA AIARLLRGRT DNAVKNHWNC SLKRRLADVG VAEEEERPCK  180
RASVSPESTS GSGSDRSDLS NGGVLNFGLG QVYRPLARTG RFEPADCAMS QRHEVELEEE  240
AEDPLTSLSL SLPGTDAHGF RHDSSHSHFH QPSPSPSPPP APAPTSYPFS PEFAAVMQEM  300
VLDEVRRYIS GVGCSANLPS MPQVVDGVMR AAAERAGGLA RMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-36621664108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_63964.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3641590.0AK364159.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2022D22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162234.11e-151transcription factor MYB44-like
TrEMBLA0A287XXX20.0A0A287XXX2_HORVV; Uncharacterized protein
STRINGMLOC_63964.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.14e-47myb domain protein 77