PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_63870.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 489aa    MW: 55274.8 Da    PI: 9.5882
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_63870.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06110133226
                   -S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                   k++lC+ff+  G C  G+ C F+H+
  MLOC_63870.4 110 KRVLCKFFMH-GACLKGEYCEFSHD 133
                   89****8888.*************5 PP
2zf-CCCH283.6e-09141161526
                   --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    C f++r G C+yG+rC++ H+
  MLOC_63870.4 141 VCTFYQR-GSCSYGSRCRYDHV 161
                   5999999.*************7 PP
3zf-CCCH20.77.6e-07271293326
                   S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                   +++C+ fa+ G C+yG+ C+ +Hg
  MLOC_63870.4 271 MPICS-FAAAGNCPYGEECPHMHG 293
                   68999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF156631.9E-7107167No hitNo description
SMARTSM003561.8E-5108134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22108135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-7109133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-4110136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.849136163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-5137160IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4138162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4141160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.737268295IPR000571Zinc finger, CCCH-type
SMARTSM003560.0068268294IPR000571Zinc finger, CCCH-type
SuperFamilySSF578505.71E-13326401No hitNo description
Gene3DG3DSA:3.30.40.101.5E-9330396IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF136395.2E-7336395IPR001841Zinc finger, RING-type
CDDcd001622.61E-4336396No hitNo description
PROSITE profilePS5008912.297337395IPR001841Zinc finger, RING-type
SMARTSM001842.9E-7337394IPR001841Zinc finger, RING-type
PROSITE patternPS005180361370IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.648424453IPR000571Zinc finger, CCCH-type
SMARTSM003560.01424452IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MTPVSRPRGR LHAPRRGPDL SFPTPPVFRN HSPVRYPRRK AELPPPQKKA RRRDGTGRRA  60
PDRQTDRQRG KRRPRRDPPQ ASPRRRDDGR RGEGVPGFGA HPLGPAMSTK RVLCKFFMHG  120
ACLKGEYCEF SHDWSDQSNN VCTFYQRGSC SYGSRCRYDH VKVSRNNPVP PLPSSSAATR  180
NPVRPPPSSS TATHVASTSL QLLSSGRPLH PGHQTNSSNQ RQQISMDKLS LSESKPAWRN  240
EVQPDSVSED GIDWSSIQTA QNQTSMKLAD MPICSFAAAG NCPYGEECPH MHGDLCAFCG  300
KMCLHPYRPD ERQEHIKLCE KNHKRLEALK RSQEIECSVC LDRVLSKPTA AERKFGLLSE  360
CDHPFCISCI RNWRGNSPTS GMDVNSALRA CPICRKLSYY VIPSVLWYFS KEEKLEITEN  420
YKAKLKSIDC KYFDFGTGTC PFGTSCFYKH AYRDGRLEEV VLRHLDCDDG STLIAKNIRL  480
SDFLGRLHL
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_63870.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2481880.0AK248188.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156g01, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148371.10.0E3 ubiquitin-protein ligase makorin-like isoform X3
SwissprotQ5ZA070.0C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A287WBX80.0A0A287WBX8_HORVV; Uncharacterized protein
STRINGMLOC_63870.40.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-118C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]