PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_62882.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WOX
Protein Properties Length: 283aa    MW: 31606.5 Da    PI: 9.7541
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_62882.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.72e-132782252
                  T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHH CS
      Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrR 52
                  ++R+ +t+eql +L  l+++  r+p+aee+ + +++l     ++ ++V+ WFqN+ 
  MLOC_62882.1 27 QPRWVPTREQLAVLDGLYRQgMRTPTAEEIHQVTARLqehgPIEGKNVFHWFQNQM 82
                  58*****************99****************99999************85 PP
2Wus_type_Homeobox86.43.1e-282787363
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerq 63
                       ++RW Pt eQ+ +L+ ly++G+rtP++eei+++ta+L+e+G ie+kNVf+WFQN+    rq
       MLOC_62882.1 27 QPRWVPTREQLAVLDGLYRQGMRTPTAEEIHQVTARLQEHGPIEGKNVFHWFQNQMVQLRQ 87
                       78****************************************************9765554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.88E-91992IPR009057Homeodomain-like
PROSITE profilePS500718.732388IPR001356Homeobox domain
PfamPF000463.9E-112782IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-42883IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MESIDHHDEA ATRLSLSPPH PSAPLSQPRW VPTREQLAVL DGLYRQGMRT PTAEEIHQVT  60
ARLQEHGPIE GKNVFHWFQN QMVQLRQMEK QQRSDYFARQ FRRPQPLPVL HSPPGHPFSP  120
FQLQAPPAPN TPACNGEATY MQQPCYMSGP ATQAAANPTY YSQMQPPIMY PSAETMAHGN  180
AQAQAQAQAQ AAMYYQAASP NNSNTQQTHA LQLPPTAGSY GARNAYSNRP VLLNLFPQYP  240
TFANRKKTRR VRSVGSARPS TSGSISWETE SPKIPNRQIV VDL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_62882.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-138HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020175041.11e-150WUSCHEL-related homeobox 5-like
SwissprotA2WWU75e-40WOX5_ORYSI; WUSCHEL-related homeobox 5
SwissprotQ8LR865e-40WOX5_ORYSJ; WUSCHEL-related homeobox 5
TrEMBLM0XTJ60.0M0XTJ6_HORVV; Uncharacterized protein
STRINGMLOC_62882.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75093548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.14e-24WUSCHEL related homeobox 2