PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_62844.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 213aa    MW: 23727.9 Da    PI: 4.527
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_62844.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.3e-1475119655
                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +Er RR+++N+++ +Lr+++P+      +K++Ka+i + A+eYI++Lq
  MLOC_62844.3  75 ILMERDRRRKLNEKLYTLRSVVPNI-----TKMDKASIIKDAIEYIQHLQ 119
                   579*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.23469118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-1473123No hitNo description
SuperFamilySSF474599.03E-1873131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-1274119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-1775131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1675124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550214.58E-5131197No hitNo description
PROSITE profilePS516718.941135211IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDPDMGENFA YYWETQRYLE SEELVDSIFV GATEDAISYY DSSSPDGSHS SSTLTGAAMP  60
GAGIGMGGTG ANKNILMERD RRRKLNEKLY TLRSVVPNIT KMDKASIIKD AIEYIQHLQA  120
EERQMEAEVS EKVLVVSVTC SKQRDAMTKV CRVLEELRLR VITANITSVS GCLMHTLFVE  180
VDEMDRFQMK ETVEAALSQL DSIGSPPLSS MSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_62844.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2496710.0AK249671.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf38g03, mRNA sequence.
GenBankAK2509170.0AK250917.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf98c12, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579501.11e-102transcription factor bHLH35
TrEMBLA0A446MAQ11e-139A0A446MAQ1_TRITD; Uncharacterized protein
STRINGTraes_2BL_8FED05903.11e-107(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.19e-42bHLH family protein