PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

NF-YA

Protein Properties

Length: 243aa MW: 26588.6 Da PI: 9.8908

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_62730.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	107.4	1.1e-33	135	191	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rakle+e+kl ksrkpylheSRh+hA++R+Rg+gGrF MLOC_62730.1 135 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKSRKPYLHESRHQHAMKRARGTGGRF 191 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.5E-38	133	194	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	39.328	134	194	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.0E-29	136	191	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.8E-25	137	159	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	139	159	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.8E-25	168	191	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010262	Biological Process	somatic embryogenesis
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0055046	Biological Process	microgametogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MRRKQNMHEN GTIMIQFGQQ VPNYESSASD SPREVSGMSE GSFNEQNDQS GNRDGYTKSD 60 EGKMMSALSL GNSETAYTPP KPDRTHPFAI SYPYADPYYG GAVAAYGTHA IMHPQMVGMV 120 PSSRVPLPIE PAAAEEPIYV NAKQYHAILR RRQLRAKLEA ENKLVKSRKP YLHESRHQHA 180 MKRARGTGGR FLNAKEKSEA ASGGGNASAR SGHASVPADG GMFSKHDHTL PSGDFHYRAR 240 GGA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-24	135	198	2	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_62730.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK355372	0.0	AK355372.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1019N07.
GenBank	AK360528	0.0	AK360528.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1119O03.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179090.1	1e-173	nuclear transcription factor Y subunit A-7-like
Swissprot	Q945M9	7e-40	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	A0A287PPZ2	1e-179	A0A287PPZ2_HORVV; Uncharacterized protein
STRING	MLOC_62730.2	1e-180	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1373	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	2e-36	nuclear factor Y, subunit A3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]