PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_62665.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 597aa    MW: 64206.8 Da    PI: 5.7413
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_62665.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS312.31.1e-951925962374
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshlt 97 
                    +lL+ecA+av++++ +++q+l++ l+elasp+gd  q+la+yf+++L arl+ s++++ ++l++ ++++++  +++  + l f+e+sP+  f+h++
  MLOC_62665.1 192 SQLLMECARAVATRESQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASGPRTLRTLAAATDRNTS-FDSTRRTALrFQELSPWSSFGHVA 287
                   589************************************************************999998544.4444444446************** PP

          GRAS  98 aNqaIleavege.......ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvl 181
                   aN aIle++ ++       +r Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s++++      ++ ++e+g+r++kfA+ +gvpf+f+++
  MLOC_62665.1 288 ANGAILESFLEAaaassepQRFHILDLSNTFCTQWPTLLEALATRSpDDTPHLSITTVVSAAPSaptsaVQRVMREIGQRMEKFARLMGVPFRFRAV 384
                   *******987766667778999***********************9899**********99888899989999************************ PP

          GRAS 182 vak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse.............sFlerflea 260
                   +++ +l++l+l++L++++   +  +aVn++ +l  ++  ++  +  r  +   +++l+P++v+vve+ead+   +              Fl+ f e 
  MLOC_62665.1 385 HHSgDLAELDLDSLDLREggaNTGIAVNCMNSLRGVV--PGGARR-RGVFAASLRRLEPRIVTVVEEEADLvA-TdpdasdegcdteaAFLKVFGEG 477
                   8888**************877777************9..555554.88**********************953.4479999*****99********* PP

          GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee... 354
                   l+++sa +dsle+++p++s+er  +Er   gr+iv++v+c  +e+ er+et++ W +rl++aGF+pvp+se++a+++++llr++  +g+++ e    
  MLOC_62665.1 478 LRFFSAYMDSLEESFPKTSNERLALERG-AGRAIVDLVSCPASESMERRETAAAWARRLRSAGFSPVPFSEDVADDVRSLLRRYR-EGWSMREAstd 572
                   ****************************.*******************************************************9.88777755455 PP

          GRAS 355 ....sgslvlgWkdrpLvsvSaWr 374
                        + ++l Wk++pLv++SaWr
  MLOC_62665.1 573 esaaGAGVFLAWKEQPLVWASAWR 596
                   566445566**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.622165570IPR005202Transcription factor GRAS
PfamPF035143.7E-93192596IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MDTLFRLVSL QASEQQQQQQ SASYNSRSTT SSGSRSSSHQ TNASYNYYHH STSSGGGGGG  60
GGGGQYYYSQ QQPQQSYYLE PYQEECGGNA HQHHLYMDED FSSSSSSRQH FHSHGGAAGQ  120
PPTSSATPTA PTPPLSTSST AGGAGHALFE AADLSFPPDL NLDFSSPASS SGAGGTASSG  180
AVGGGGGGRW ASQLLMECAR AVATRESQRV QQLMWMLNEL ASPYGDVEQK LASYFLQGLF  240
ARLTASGPRT LRTLAAATDR NTSFDSTRRT ALRFQELSPW SSFGHVAANG AILESFLEAA  300
AASSEPQRFH ILDLSNTFCT QWPTLLEALA TRSPDDTPHL SITTVVSAAP SAPTSAVQRV  360
MREIGQRMEK FARLMGVPFR FRAVHHSGDL AELDLDSLDL REGGANTGIA VNCMNSLRGV  420
VPGGARRRGV FAASLRRLEP RIVTVVEEEA DLVATDPDAS DEGCDTEAAF LKVFGEGLRF  480
FSAYMDSLEE SFPKTSNERL ALERGAGRAI VDLVSCPASE SMERRETAAA WARRLRSAGF  540
SPVPFSEDVA DDVRSLLRRY REGWSMREAS TDESAAGAGV FLAWKEQPLV WASAWRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-15918659728420Protein SHORT-ROOT
5b3h_E1e-15918659728420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_62665.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3709790.0AK370979.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2121H05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176974.10.0protein SHORT-ROOT 1
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLF2E4A50.0F2E4A5_HORVV; Predicted protein
STRINGMLOC_62665.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-125GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]