PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_62237.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family B3
Protein Properties Length: 354aa    MW: 39323.6 Da    PI: 10.0082
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_62237.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.82.7e-15249339498
                   E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
            B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                   +++ s+v     l lp +f++e+   ++ +++l+l +++g+ W+v++ ++ k++   l++GW +F  +n+L+  D++vF+l +  + + +v ++r
  MLOC_62237.3 249 IMKESYVYVGFFLNLPCEFVRECL--PRANRKLKLWNPQGKFWDVNYVFNSKRSVGALSGGWGKFSLDNNLEKFDVCVFELFS--KDNIKVYIYR 339
                   678899999999***********5..335568***************9999988899***********************875..4445777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-22237339IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-22239339IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.5E-13246341IPR003340B3 DNA binding domain
PROSITE profilePS5086312.492246341IPR003340B3 DNA binding domain
CDDcd100171.18E-22248339No hitNo description
PfamPF023627.5E-13249339IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDANGSTSKK RSSILENGMS EASAVTCKVA PTSLKMDLNA ADPPEAVVVP LEEGNRTTRE  60
RVRETDANDS ALRKSLRVRE TDANDSALHK SSRVREIDAN DSALQKSLRV REIDANDSAL  120
QKSLWVRDID ANGSVLQKSS IALDKDKKRC PAASVGTYKS ASTSLDSTED SDSSSSMLEQ  180
SISCIKSELT SPIRLGVSKD AARRGNNSAT GKRQLKVISQ RPRITEIQKD NTLLRAKQFK  240
SKNPFGLQIM KESYVYVGFF LNLPCEFVRE CLPRANRKLK LWNPQGKFWD VNYVFNSKRS  300
VGALSGGWGK FSLDNNLEKF DVCVFELFSK DNIKVYIYRV VPEITPFLPG PGKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_62237.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659260.0AK365926.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039A04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166536.11e-178B3 domain-containing protein Os11g0197600-like
SwissprotQ2R9D24e-77Y1176_ORYSJ; B3 domain-containing protein Os11g0197600
TrEMBLA0A287NWF50.0A0A287NWF5_HORVV; Uncharacterized protein
TrEMBLF2DPV80.0F2DPV8_HORVV; Predicted protein
STRINGMLOC_62237.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.15e-13B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]