 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
MLOC_61919.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
| Family |
CO-like |
| Protein Properties |
Length: 396aa MW: 43695.4 Da PI: 4.6485 |
| Description |
CO-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MLOC_61919.1 | genome | IBSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 18.5 | 4.1e-06 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
C+ ++e++ +C+++ lC +C + H+ Ht++
MLOC_61919.1 4 LCDYCGEHRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
6******99*********************657888889876 PP
|
| 2 | zf-B_box | 25.9 | 2.1e-08 | 47 | 89 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
C+++ ++++ C + ++ lC++C ++H+ H++++
MLOC_61919.1 47 LCDRCASQPAMVRCLEENTSLCQNCDWNGHSAgssaagHKRQN 89
7*****************************6688899998876 PP
|
| 3 | CCT | 62.8 | 1e-21 | 340 | 383 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
R++a++RYkeK+k+RkF+ kirYesRKa+A+ R+RvKGrFvk+
MLOC_61919.1 340 RDNAITRYKEKKKRRKFDHKIRYESRKARADVRKRVKGRFVKAG 383
899**************************************985 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 396 aa
Download sequence Send
to blast |
MGALCDYCGE HRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC 60
LEENTSLCQN CDWNGHSAGS SAAGHKRQNI NCYSGCPSSA ELSRMWSFIL DIPNVAPELN 120
CEQVISMMSI SDSAVSNGDN AQGDNSLVDM ACATLDEEDK QKSVIGSSSE AGLNLLPPTN 180
DQTAVSVDST TPKYTPDKHM FSKDSIYEDF SMDDIDLSYE NYEELFGNSH IQTEELFDDA 240
GIDSYFEIKE VTAVNSDEQP KPKQPAASNA LSADSGMSNP AVKEDDSSLC IPARQAISYS 300
GFTGESIPEE YQDCGVSPML LMGEPPWLPP GPDGSFAGIR DNAITRYKEK KKRRKFDHKI 360
RYESRKARAD VRKRVKGRFV KAGEAYDYDP LDTRSY
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 349 | 353 | KKKRR |
| 2 | 349 | 354 | KKKRRK |
| 3 | 350 | 354 | KKRRK |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK253130 | 0.0 | AK253130.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf114k16, mRNA sequence. |
