 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
MLOC_61712.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
| Family |
HB-other |
| Protein Properties |
Length: 357aa MW: 39498.4 Da PI: 7.8591 |
| Description |
HB-other family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MLOC_61712.1 | genome | IBSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 25.2 | 2.8e-08 | 13 | 75 | 6 | 56 |
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
+ft+ ++ e+ee+ + n p+++ ++ LA+k ++ +qV +WFqNrR+ ++
MLOC_61712.1 13 RFTHAEVAEMEEHLRHlnNAIPQRSVIQGLAEKFtasasrtgkiPVQYKQVWNWFQNRRYSQR 75
6999********999555999*********************99999*************998 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 357 aa
Download sequence Send
to blast |
MGRPPSSGGP AFRFTHAEVA EMEEHLRHLN NAIPQRSVIQ GLAEKFTASA SRTGKIPVQY 60
KQVWNWFQNR RYSQRARTPR GAPPPQGKML PTGAEEHHPA SFRAQGSSSS YPGSHSGKSA 120
SDGGMAEFEA KSARDGAWYD VAAFLSHRLF ETGDPEVKVR FSGFGPEEDE WINVRKCVRL 180
RSLPCESAEC VAVLPGDLIL CFQEGKEQAL YFDARVLDAQ RRRHDVRGCR CRFLVRYDHD 240
HSEEIVPLRK VCRRPETDFR LQILHASRAA AAADAQNVSP PEQKPQKPHK MMDVNTAEVT 300
VVPNPDQGGP SDKPAAPLPA APTSIRSDSV SDVQMGNVEI IPKVEAANEA QDDKMSV
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4iuq_A | 7e-46 | 128 | 256 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuq_B | 7e-46 | 128 | 256 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iur_A | 7e-46 | 128 | 256 | 6 | 134 | SHH1 SAWADEE |
| 4iur_B | 7e-46 | 128 | 256 | 6 | 134 | SHH1 SAWADEE |
| 4iut_A | 7e-46 | 128 | 256 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iut_B | 7e-46 | 128 | 256 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_A | 7e-46 | 128 | 256 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_B | 7e-46 | 128 | 256 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_A | 7e-46 | 128 | 256 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_B | 7e-46 | 128 | 256 | 6 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK252943 | 0.0 | AK252943.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf178n11, mRNA sequence. |
| GenBank | AK363505 | 0.0 | AK363505.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2016B04. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G18380.1 | 1e-103 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
