PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_61603.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HD-ZIP
Protein Properties Length: 869aa    MW: 95293.1 Da    PI: 5.7206
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_61603.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.3e-193290357
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
      Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                  k  ++t+eq+e+Le++++++++p+ ++r++L +++    +++ rq+kvWFqNrR ++k+
  MLOC_61603.1 32 KYVRYTPEQVEALERVYAECPKPTSTRRQQLLRECpilsNIEPRQIKVWFQNRRCRDKQ 90
                  5678****************************************************996 PP
2START161.75.4e-511703772204
                   HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEE CS
         START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmva 96 
                   +aee+++e+++ka+ ++  Wv ++ +++g+++  +++ s++++g a+ra+g+v  ++++ ve+l d++  W +++++ e+   +  g  g+++l ++
  MLOC_61603.1 170 IAEETLTEFLSKATGTAVDWVPMPGMKPGPDSFGIVAISHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTMLPAGngGTIELVYM 265
                   6899******************************************************9999999999.****************9999******** PP

                   XXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHH CS
         START  97 elqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksgl 189
                   +++a+++lvp Rdf+++Ry+ ++++g++v++++S++     p+    +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++lr+l++s++
  MLOC_61603.1 266 QMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPStasAQQFVRAEMLPSGYLVRPCDGGGSIVHIVDHLDLEAWSVPEVLRPLYESSR 362
                   ************************************9999998888899************************************************ PP

                   HHHHHHHHHHTXXXX CS
         START 190 aegaktwvatlqrqc 204
                   + ++k+++a+l++ +
  MLOC_61603.1 363 VVAQKMTTAALRHIR 377
                   ***********9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-191390IPR009057Homeodomain-like
PROSITE profilePS5007115.6772791IPR001356Homeobox domain
SMARTSM003894.3E-162995IPR001356Homeobox domain
SuperFamilySSF466892.35E-163193IPR009057Homeodomain-like
CDDcd000866.46E-173292No hitNo description
PfamPF000463.0E-163390IPR001356Homeobox domain
CDDcd146866.59E-684123No hitNo description
PROSITE profilePS5084827.176160388IPR002913START domain
CDDcd088753.65E-73164380No hitNo description
Gene3DG3DSA:3.30.530.201.2E-21168355IPR023393START-like domain
SMARTSM002341.1E-38169379IPR002913START domain
PfamPF018525.7E-49170377IPR002913START domain
SuperFamilySSF559611.65E-36170381No hitNo description
PfamPF086706.4E-49726868IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 869 aa     Download sequence    Send to blast
MAAAVAAMRC GSGSGSDGGG GGYDKGGMDS GKYVRYTPEQ VEALERVYAE CPKPTSTRRQ  60
QLLRECPILS NIEPRQIKVW FQNRRCRDKQ RKESSRLQAV NRKLSAMNKL LMEENERLQK  120
QVSQLVHENA YMKQQLQNPS LANDTSCESN VTTPPNPLRD ASNPAGLLAI AEETLTEFLS  180
KATGTAVDWV PMPGMKPGPD SFGIVAISHG CRGVAARACG LVNLEPTKIV EILKDRPSWF  240
RDCRSLEVFT MLPAGNGGTI ELVYMQMYAP TTLVPARDFW TLRYTTTMED GSLVVCERSL  300
SGSGGGPSTA SAQQFVRAEM LPSGYLVRPC DGGGSIVHIV DHLDLEAWSV PEVLRPLYES  360
SRVVAQKMTT AALRHIRQIA QETSGEVVYA LGRQPAVLRT FSQRLSRLVL ANDTAIFACA  420
CLGLMIILTP FLCPFRGFND AISGFNDDGW SVMAGDGIED VIIACNSKKI RSNNTAPNAF  480
IAPGGVICAK ASMLLQSVPP AVLVRFLREH RSEWADYNFD AYSASALKSS SCSLPGLRPM  540
RFSGSQIIMP LAHTVENEEI LEVVRLEGQA LDEGLLSRDI HLLQFCTGID EKSMGSCFQL  600
VFAPIDELFP DDAPLISSGF RVIPLDMKTD GAPTGRTLDL ASSLEAGSTT LQASGNADDC  660
NLRSVLTIAF QFPYEMHLQD SVATMARQYV RSIVSAVQRV SMAISPSRSG LNAEQKIISG  720
FPEAATLARW ICQSYRFHLG VELFRQADEA GESLLRMLWD HEDAILCCSF KEKPVFTFAN  780
EMGINMLETS FVALQDLSLD KIFDEAGRKA LYSEIPKLME QGFVYLPGGV CLSGMGRHVS  840
FENAIAWKVV GEDNNVHCLA FCFVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_61603.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3620090.0AK362009.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001M18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174778.10.0homeobox-leucine zipper protein HOX9
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLM0XNE50.0M0XNE5_HORVV; Uncharacterized protein
STRINGMLOC_61603.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein