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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
MLOC_61420.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family |
HD-ZIP |
Protein Properties |
Length: 748aa MW: 81308.7 Da PI: 5.6897 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
MLOC_61420.1 | genome | IBSC | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 66.9 | 2.6e-21 | 42 | 97 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++ +++t++q++eLe+lF+++++p++++r eL+k+l+L+ rqVk+WFqNrR+++k
MLOC_61420.1 42 KKRYHRHTPQQIQELEALFKECPHPDEKQRGELSKRLSLDARQVKFWFQNRRTQMK 97
678899***********************************************999 PP
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2 | START | 182.6 | 2.2e-57 | 256 | 488 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHH.HHHHHHCCCGGCT-TT-S....EEEE CS
START 1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvla.llveellddkeqWdetla....kaet 81
ela +a++elvk+a+ ++p+Wv+ es+n +e+l + + + + +ea+r+sg+v+ + lve+l+d + +W+ ++ ka++
MLOC_61420.1 256 ELAISAMDELVKMAQTDDPFWVTGLpgfpdkESLNFEEYLHSSQHCIGmkpagFVSEASRESGLVIIDNSlALVETLMDER-RWSDMFScmiaKATI 351
57889******************9999999999999999999966655999999***********9876658999999999.*************** PP
EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEEEEEEECTCEEEEEE CS
START 82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgiliepksnghskvtw 166
le +s+g gal lm+aelq+lsplvp R++ f+R+++ql +g w++vdvS+d ++++ ++++lpSg+++++++ng++kvtw
MLOC_61420.1 352 LEEVSNGiggtrnGALLLMKAELQVLSPLVPiREVIFLRFCKQLAEGAWAVVDVSIDGLLSNQNsattsAGANLKCRRLPSGCVMQDTPNGYCKVTW 448
*********************************************************88777776654222358*********************** PP
EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
veh++++++++h+ +r+l++sgla+ga++w+atlqrqce+
MLOC_61420.1 449 VEHTEYDEASVHQFYRPLLRSGLAFGASRWLATLQRQCEC 488
**************************************96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009827 | Biological Process | plant-type cell wall modification |
GO:0042335 | Biological Process | cuticle development |
GO:0043481 | Biological Process | anthocyanin accumulation in tissues in response to UV light |
GO:0048765 | Biological Process | root hair cell differentiation |
GO:0008289 | Molecular Function | lipid binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 748 aa
Download sequence Send
to blast |
MARDAEAQND SRSGSDHLDA ISGVGDDDDD AEPSGSNPRK RKKRYHRHTP QQIQELEALF 60 KECPHPDEKQ RGELSKRLSL DARQVKFWFQ NRRTQMKTQL ERHENALLKQ ENEKLRTENL 120 TIREAMRTPM CGGCGSPAML GEVSLEEQHL RIENARLKDE LNRVCTLATK FLGKPVSLLS 180 PLQLQPHLSM PLPNSSLELA VGGIGGIGSM QSSMHGMMSE YAGGASSSMG TVITPARATG 240 SALASMVDID RSVFLELAIS AMDELVKMAQ TDDPFWVTGL PGFPDKESLN FEEYLHSSQH 300 CIGMKPAGFV SEASRESGLV IIDNSLALVE TLMDERRWSD MFSCMIAKAT ILEEVSNGIG 360 GTRNGALLLM KAELQVLSPL VPIREVIFLR FCKQLAEGAW AVVDVSIDGL LSNQNSATTS 420 AGANLKCRRL PSGCVMQDTP NGYCKVTWVE HTEYDEASVH QFYRPLLRSG LAFGASRWLA 480 TLQRQCECLA ILMSSATASP NEQTAISQEG RRSMLKLARR MTENFCAGVS ASSAREWSKL 540 DGATGSIGED VRVMARKSVS EPGEPPGVVL SAATSVWVPI APEKLFDFLR DEQLRAEWDI 600 LSNGGPMQEM ARIAKGHQNG NSVSLLRASA MSANQSSMLI LQETCTDASG SIVVYAPVDI 660 PAMQLVMNGG DSTYVALLPS GFAILPDGPS IGSEHKTGGS LLTVAFQILV NSQPTAKLTV 720 ESVETVNNLI SCTIKKIKTA LQCATPEC
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 37 | 43 | PRKRKKR |
2 | 38 | 42 | RKRKK |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK362919 | 0.0 | AK362919.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2011D04. |