PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_61210.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

C3H

Protein Properties

Length: 290aa MW: 31062.3 Da PI: 7.8793

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_61210.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.4	3.2e-10	102	127	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ f++ GtC+y +C+FaHg+ MLOC_61210.1 102 FKTKLCCKFRA-GTCPYVTNCNFAHGM 127 69*******.***********95 PP
2	zf-CCCH	18.6	3.4e-06	175	200	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ MLOC_61210.1 175 YKGRHCKKFYTEEGCPYGDTCTFLHD 200 78888********************7 PP
3	zf-CCCH	43.8	4.3e-14	242	267	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg MLOC_61210.1 242 WKTRICNKWEMTGYCPFGSKCHFAHG 267 8************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.4E-14	99	134	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.75E-8	99	132	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0014	101	127	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.028	101	128	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.7E-7	102	127	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.26E-7	173	202	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.5E-9	173	202	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.35	174	201	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.573	174	202	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-9	238	268	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.0E-15	238	268	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.1E-9	241	268	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.422	241	269	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.9E-11	242	267	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MDYTNAIHII PDAAGPESWA NSAAPPSGDS GIWATEDDYS QWNGDQGLSG GCYGGGTNSS 60 QPHSRAGSEQ PPPGKKPRGS GPSGGGDAGS TSKSRAIGKM FFKTKLCCKF RAGTCPYVTN 120 CNFAHGMEEL RKPPPNWQEI VAAHEEATEQ REEHQIPIMT SSNVVPGDSV SGRAYKGRHC 180 KKFYTEEGCP YGDTCTFLHD EQSKARESVA ISLSPSVGGG SYNSAAAAAA PNGPTILKPS 240 NWKTRICNKW EMTGYCPFGS KCHFAHGAAG TFQRSYWTTR TDQARFMSSL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_61210.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373307	0.0	AK373307.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3026K08.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020198349.1	1e-174	zinc finger CCCH domain-containing protein 56
Swissprot	Q84UQ3	1e-127	C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBL	F2EAY2	0.0	F2EAY2_HORVV; Predicted protein
STRING	MLOC_61210.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6615	38	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	4e-83	C3H family protein