PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_61146.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family G2-like
Protein Properties Length: 430aa    MW: 47674.3 Da    PI: 11.7063
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_61146.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.31.3e-31307362156
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                   k+r++W+peLH++Fv a++qLGG+++AtPk+i+e+mkv+gLt+++vkSHLQkYRl+
  MLOC_61146.2 307 KTRRCWSPELHRHFVAALHQLGGPQVATPKQIREVMKVDGLTNDEVKSHLQKYRLH 362
                   68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-28304365IPR009057Homeodomain-like
PROSITE profilePS5129413.772304364IPR017930Myb domain
SuperFamilySSF466892.69E-16305364IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-25307362IPR006447Myb domain, plants
PfamPF002491.5E-6309360IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MRAPSRSPTQ HPPLLSFSRL ASPPLPSHRY QLPSVRPSVA ADRERWRAAC VPLLARVSLH  60
GAGRRRDRDA PRPGPRPQAI RRQDRRPARR RRQGAARRRR LHPRPRGGAP QDRGLPPRAA  120
PLRPPPRRRS ATHPFHPNGF SFSFFCLFVC LFRFCLTRAV ACAVIEFMKE EAAKRSERRD  180
ADDNDKRKWM STAQLWVDSR AADPLKEQKK ESALSKPMLL GGATGAPMAV SCGAMPPPPA  240
PQYFGRDDKI VGAEGLPALP MMSPAANRQF SPPADDRHQA FAAKFAAAMP PPPSGPGLQA  300
HDQQSRKTRR CWSPELHRHF VAALHQLGGP QVATPKQIRE VMKVDGLTND EVKSHLQKYR  360
LHNQRSPSSS SASHPIMLVG DLWAHQEQSS SQSRSPEGPL QLSCSGVAVS ALTVSDSSEE  420
DDRSVGYSRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-13307360154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-13307360154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-13307360154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-13307360154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18491RRPARRRR
284100RRPARRRRQGAARRRRL
397104RRRLHPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_61146.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3592040.0AK359204.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1091O11.
GenBankAK3672830.0AK367283.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2054A04.
GenBankAK3688590.0AK368859.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2081E17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199780.11e-154uncharacterized protein LOC109785601
TrEMBLA0A287SFK30.0A0A287SFK3_HORVV; Uncharacterized protein
STRINGMLOC_61146.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.12e-28G2-like family protein