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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
MLOC_61111.1 |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
Family |
C3H |
Protein Properties |
Length: 598aa MW: 64017.7 Da PI: 7.8868 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
MLOC_61111.1 | genome | IBSC | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 25 | 3.3e-08 | 206 | 228 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26
++C++f+r G C+ Gd+C F+Hg
MLOC_61111.1 206 VPCPNFRRPGGCPSGDNCEFSHG 228
79********************9 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 598 aa
Download sequence Send
to blast |
MVAATYGSAR VVSLLLGRTG WVDVARRPGG DGFTPLHCAA SGGSCNAVQV VKMLLDAGAD 60 PATADSTGRV PADVVRAPPA SADALGDLEI LLGRRRALAV ATSAASGASS PPLSSSPDDE 120 GNRSPSSRSS SLSPITVDRA KKEYPVDPTL PDIKSSVYAS DEFRMFAFKV RPCSRAYSHD 180 WTECPFVHPG ENARRRDPRK HPYTAVPCPN FRRPGGCPSG DNCEFSHGVF ESWLHPTQYR 240 TRLCKEGAAC ARRICFFAHD EDELRHVPHN SGAGLLSPRA TSSIDMTAAA ALGLLPGSPR 300 HFAPPPGSPS AMNNGGAASA HWLQGSRLRS SFNARDATVE DLGLLLDWES QYLGALCLPP 360 SSRPQPRLST GLSIRPTAIV PTSLEDMYAS EMGMSPRFTN DQGHSAYSPA HKSAILNKLH 420 QQKGLLSPVN TNRMYSPRAL DPAALVQSPI GGMSPRSPRL MEPTSPINAR FGAAVTQREM 480 YEQFSNLNKH QLPSVGSPRN SNAASWGNAG SPMGKVDWGV DGEELDRLRC PDQPGFAEKE 540 PDAPWGRSPN SNRGEMQLGI SGGMASGSAN RPDWNNQADI LDQMAIGAWL EQLQTDQK
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK357194 | 0.0 | AK357194.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1047P21. |
GenBank | AK363392 | 0.0 | AK363392.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2015B03. |
GenBank | AK364612 | 0.0 | AK364612.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2026O22. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT2G41900.1 | 1e-130 | CCCH-type zinc finger protein with ARM repeat domain |