PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_60283.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 609aa    MW: 62742.3 Da    PI: 9.6344
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_60283.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY941.1e-29231290159
                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg Hnh+
  MLOC_60283.1 231 MNDGCQWRKYGQKISKGNPCPRAYYRCTVAaGCPVRKQVQRCAEDMSILITTYEGAHNHQ 290
                   58***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-31216290IPR003657WRKY domain
SuperFamilySSF1182901.7E-26224291IPR003657WRKY domain
PROSITE profilePS5081127.806226292IPR003657WRKY domain
SMARTSM007744.5E-36231291IPR003657WRKY domain
PfamPF031066.4E-26232290IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MIKGDQRQLG GHDERLQDQM RDDHRASDGN FFKFLQNQSS TKKEAQEDKI ASTRAEMGEV  60
RKENERLKTL LSRMVEDHRS LQKQFDVLHQ QGRGKNPAVG SPEHTSPADG PGFISLRLGT  120
SRQNMGEEIK GNTNNPDGKG ISLGPSSARG AVGARTDGSE TKVGPDVVTL SPGGSSEEDA  180
TTETTTTSAP SKAAKIPRST GGVEAEEEVA QQPLAKKARV SVRARCDTPT MNDGCQWRKY  240
GQKISKGNPC PRAYYRCTVA AGCPVRKQVQ RCAEDMSILI TTYEGAHNHQ LSASAAAMAS  300
TTSAAASMLM SGSSTSLGFP SIASSLHGLR FGLPGASSDA SSNQLGGRPF FLPAATGASI  360
SATPSYPTIT LDLTSQAASQ QAFSLSNNNR FSSSFTGSHG HSSSTGGRYP STSFSFSGSG  420
ASSLPGATAW PAGVGSYLSY GSSSGAPYNG AGKSSFEAAL SGINGRQQGS MASLYQPAQV  480
QQMAAQLSGG NTGRAAPIVL TDTIAKAITS DPGFHTALAA AITSYVGKPA AGSGKGLEWG  540
EHLGLGPSSA AAAAAACSSS VLARSSSTAA AQSGSPNGKM SFLHASLALS SSSSATPSTS  600
PVKKREHIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-19218291173WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_60283.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2485550.0AK248555.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf78b10, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199168.10.0probable WRKY transcription factor 61
TrEMBLM0XI790.0M0XI79_HORVV; Uncharacterized protein
STRINGMLOC_60283.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.12e-48WRKY DNA-binding protein 61