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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_60283.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | WRKY | ||||||||
Protein Properties | Length: 609aa MW: 62742.3 Da PI: 9.6344 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94 | 1.1e-29 | 231 | 290 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+aed +++++tYeg Hnh+ MLOC_60283.1 231 MNDGCQWRKYGQKISKGNPCPRAYYRCTVAaGCPVRKQVQRCAEDMSILITTYEGAHNHQ 290 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-31 | 216 | 290 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-26 | 224 | 291 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.806 | 226 | 292 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-36 | 231 | 291 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.4E-26 | 232 | 290 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 609 aa Download sequence Send to blast |
MIKGDQRQLG GHDERLQDQM RDDHRASDGN FFKFLQNQSS TKKEAQEDKI ASTRAEMGEV 60 RKENERLKTL LSRMVEDHRS LQKQFDVLHQ QGRGKNPAVG SPEHTSPADG PGFISLRLGT 120 SRQNMGEEIK GNTNNPDGKG ISLGPSSARG AVGARTDGSE TKVGPDVVTL SPGGSSEEDA 180 TTETTTTSAP SKAAKIPRST GGVEAEEEVA QQPLAKKARV SVRARCDTPT MNDGCQWRKY 240 GQKISKGNPC PRAYYRCTVA AGCPVRKQVQ RCAEDMSILI TTYEGAHNHQ LSASAAAMAS 300 TTSAAASMLM SGSSTSLGFP SIASSLHGLR FGLPGASSDA SSNQLGGRPF FLPAATGASI 360 SATPSYPTIT LDLTSQAASQ QAFSLSNNNR FSSSFTGSHG HSSSTGGRYP STSFSFSGSG 420 ASSLPGATAW PAGVGSYLSY GSSSGAPYNG AGKSSFEAAL SGINGRQQGS MASLYQPAQV 480 QQMAAQLSGG NTGRAAPIVL TDTIAKAITS DPGFHTALAA AITSYVGKPA AGSGKGLEWG 540 EHLGLGPSSA AAAAAACSSS VLARSSSTAA AQSGSPNGKM SFLHASLALS SSSSATPSTS 600 PVKKREHIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-19 | 218 | 291 | 1 | 73 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_60283.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK248555 | 0.0 | AK248555.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf78b10, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020199168.1 | 0.0 | probable WRKY transcription factor 61 | ||||
TrEMBL | M0XI79 | 0.0 | M0XI79_HORVV; Uncharacterized protein | ||||
STRING | MLOC_60283.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5047 | 38 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18860.1 | 2e-48 | WRKY DNA-binding protein 61 |