PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_60274.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 812aa    MW: 88005.9 Da    PI: 6.6029
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_60274.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.000626166531355
                   HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   R+ i +++ eLre++P+ a      K s  + Lek+v+++  Lq
  MLOC_60274.4 616 RQLIQDRIKELREMVPNgA------KCSIDALLEKTVKHMLFLQ 653
                   67799************66......999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.2E-17385IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.829603652IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-4616665IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
MAEQVHVVGE GTIGRVAFTG THQWIIHGTA DDHGLSSEVA SEMHYQFRAG IKTIAIIPVL  60
PRGVLQLGST GVVMENTSFV MHAKKLCSQL NQRSSMAVSA SVKSTSNQSR PLHGASNIQA  120
ADSSFSQFPV IREQYRRADS ATASSSKSLN ASLFEAAQQN GLTAREHLVY SKPNDMFVQQ  180
PSYCVSRLGS NTQSAAISSD LIPSSLASVE QQQMLMNTIG QLEFGSGTDL ARSALLKSLL  240
YRNPFMHDTS DMKLSHGRVG LSHGTAGHGS YGFLPGSAGV VSTTLCTSSQ VSEQGSHSSS  300
GMLRQKQPPV SCNVPQSSEF TMKMVRQEGR SSEGALPVSS QSDVQISNCL NGISQENLLS  360
RSGHMHKDQN TNRANDPHVA VSTQGVKNMD ACMLPGMPGE TAHSLLLQPT WDNDLFDIFG  420
SEFHQLGHNV DANLVSSCDA KSHSLDRDAT EPSICLDSSS LFSSLDNDFP CSGIFSLTNT  480
DQLLDAVISN VNPSSKQSSD DNASCKTALT DIPNICHFGL EELKQCDSSG IPSTVIKNES  540
AQIVKQPYYF DKTEDGCHSQ NNGAQKSQIR LWIENGQNMK CESASASNSK GLDAPSKSNR  600
KRSRPGESSK ARPKDRQLIQ DRIKELREMV PNGAKCSIDA LLEKTVKHML FLQSVTKHAD  660
KLKDSTESKI LGSENGPVWK DYFEGGATWA FDVGSQSMTC PIIVEDLDRP RQMLVEMICE  720
DRGIFLEIAD FIKGLGLTIL RGVMEARKSK IWARFTVEAN RDVTRMEIFL SLVRLLEPNC  780
DGSGAAENPG NSVNMPLGLV HQPVIPATGG IQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_60274.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3695000.0AK369500.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2092I05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178283.10.0transcription factor LHW-like isoform X2
TrEMBLM0XI730.0M0XI73_HORVV; Uncharacterized protein
STRINGMLOC_60274.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.16e-54conserved peptide upstream open reading frame 7