PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_60274.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 722aa    MW: 78647.4 Da    PI: 7.142
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_60274.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000545746111355
                   HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   R+ i +++ eLre++P+ a      K s  + Lek+v+++  Lq
  MLOC_60274.2 574 RQLIQDRIKELREMVPNgA------KCSIDALLEKTVKHMLFLQ 611
                   67799************66......999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-8643IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.829561610IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-4574623IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MHYQFRAGIK TIAIIPVLPR GVLQLGSTGV VMENTSFVMH AKKLCSQLNQ RSSMAVSASV  60
KSTSNQSRPL HGASNIQAAD SSFSQFPVIR EQYRRADSAT ASSSKSLNAS LFEAAQQNGL  120
TAREHLVYSK PNDMFVQQPS YCVSRLGSNT QSAAISSDLI PSSLASVEQQ QMLMNTIGQL  180
EFGSGTDLAR SALLKSLLYR NPFMHDTSDM KLSHGRVGLS HGTAGHGSYG FLPGSAGVVS  240
TTLCTSSQVS EQGSHSSSGM LRQKQPPVSC NVPQSSEFTM KMVRQEGRSS EGALPVSSQS  300
DVQISNCLNG ISQENLLSRS GHMHKDQNTN RANDPHVAVS TQGVKNMDAC MLPGMPGETA  360
HSLLLQPTWD NDLFDIFGSE FHQLGHNVDA NLVSSCDAKS HSLDRDATEP SICLDSSSLF  420
SSLDNDFPCS GIFSLTNTDQ LLDAVISNVN PSSKQSSDDN ASCKTALTDI PNICHFGLEE  480
LKQCDSSGIP STVIKNESAQ IVKQPYYFDK TEDGCHSQNN GAQKSQIRLW IENGQNMKCE  540
SASASNSKGL DAPSKSNRKR SRPGESSKAR PKDRQLIQDR IKELREMVPN GAKCSIDALL  600
EKTVKHMLFL QSVTKHADKL KDSTESKILG SENGPVWKDY FEGGATWAFD VGSQSMTCPI  660
IVEDLDRPRQ MLVEMICEDR GIFLEIADFI KGLGLTILRG VMEARKSKIW ARFTVEYRQT  720
GT
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_60274.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3695000.0AK369500.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2092I05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178283.10.0transcription factor LHW-like isoform X2
TrEMBLA0A287NHB20.0A0A287NHB2_HORVV; Uncharacterized protein
STRINGMLOC_60274.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.16e-50conserved peptide upstream open reading frame 7