PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_60274.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 888aa    MW: 96100.1 Da    PI: 6.4145
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_60274.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000746917291355
                   HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   R+ i +++ eLre++P+ a     k  s  + Lek+v+++  Lq
  MLOC_60274.1 691 RQLIQDRIKELREMVPNgA-----KQCSIDALLEKTVKHMLFLQ 729
                   67799************66.....66888899******999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.5E-305160IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000830.00323672729No hitNo description
PROSITE profilePS5088810.588678728IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-5691734IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-5691741IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 888 aa     Download sequence    Send to blast
MAVGEALRRL CEEIGWSYAV FWKAIGAADP VHLVWEDGYC GHTPCPAGSE ASQARATELG  60
CSAAVDSICS LVRKDMAEQV HVVGEGTIGR VAFTGTHQWI IHGTADDHGL SSEVASEMHY  120
QFRAGIKTIA IIPVLPRGVL QLGSTGVVME NTSFVMHAKK LCSQLNQRSS MAVSASVKST  180
SNQSRPLHGA SNIQAADSSF SQFPVIREQY RRADSATASS SKSLNASLFE AAQQNGLTAR  240
EHLVYSKPND MFVQQPSYCV SRLGSNTQSA AISSDLIPSS LASVEQQQML MNTIGQLEFG  300
SGTDLARSAL LKSLLYRNPF MHDTSDMKLS HGRVGLSHGT AGHGSYGFLP GSAGVVSTTL  360
CTSSQVSEQG SHSSSGMLRQ KQPPVSCNVP QSSEFTMKMV RQEGRSSEGA LPVSSQSDVQ  420
ISNCLNGISQ ENLLSRSGHM HKDQNTNRAN DPHVAVSTQG VKNMDACMLP GMPGETAHSL  480
LLQPTWDNDL FDIFGSEFHQ LGHNVDANLV SSCDAKSHSL DRDATEPSIC LDSSSLFSSL  540
DNDFPCSGIF SLTNTDQLLD AVISNVNPSS KQSSDDNASC KTALTDIPNI CHFGLEELKQ  600
CDSSGIPSTV IKNESAQIVK QPYYFDKTED GCHSQNNGAQ KSQIRLWIEN GQNMKCESAS  660
ASNSKGLDAP SKSNRKRSRP GESSKARPKD RQLIQDRIKE LREMVPNGAK QCSIDALLEK  720
TVKHMLFLQS VTKHADKLKD STESKILGSE NGPVWKDYFE GGATWAFDVG SQSMTCPIIV  780
EDLDRPRQML VEMICEDRGI FLEIADFIKG LGLTILRGVM EARKSKIWAR FTVEANRDVT  840
RMEIFLSLVR LLEPNCDGSG AAENPGNSVN MPLGLVHQPV IPATGGIQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_60274.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3695000.0AK369500.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2092I05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178282.10.0transcription factor LHW-like isoform X1
TrEMBLM0XI700.0M0XI70_HORVV; Uncharacterized protein
STRINGMLOC_60274.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.16e-52conserved peptide upstream open reading frame 7