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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_60274.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 888aa MW: 96100.1 Da PI: 6.4145 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.1 | 0.00074 | 691 | 729 | 13 | 55 |
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLre++P+ a k s + Lek+v+++ Lq MLOC_60274.1 691 RQLIQDRIKELREMVPNgA-----KQCSIDALLEKTVKHMLFLQ 729 67799************66.....66888899******999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.5E-30 | 5 | 160 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 0.00323 | 672 | 729 | No hit | No description |
PROSITE profile | PS50888 | 10.588 | 678 | 728 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.67E-5 | 691 | 734 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.7E-5 | 691 | 741 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 888 aa Download sequence Send to blast |
MAVGEALRRL CEEIGWSYAV FWKAIGAADP VHLVWEDGYC GHTPCPAGSE ASQARATELG 60 CSAAVDSICS LVRKDMAEQV HVVGEGTIGR VAFTGTHQWI IHGTADDHGL SSEVASEMHY 120 QFRAGIKTIA IIPVLPRGVL QLGSTGVVME NTSFVMHAKK LCSQLNQRSS MAVSASVKST 180 SNQSRPLHGA SNIQAADSSF SQFPVIREQY RRADSATASS SKSLNASLFE AAQQNGLTAR 240 EHLVYSKPND MFVQQPSYCV SRLGSNTQSA AISSDLIPSS LASVEQQQML MNTIGQLEFG 300 SGTDLARSAL LKSLLYRNPF MHDTSDMKLS HGRVGLSHGT AGHGSYGFLP GSAGVVSTTL 360 CTSSQVSEQG SHSSSGMLRQ KQPPVSCNVP QSSEFTMKMV RQEGRSSEGA LPVSSQSDVQ 420 ISNCLNGISQ ENLLSRSGHM HKDQNTNRAN DPHVAVSTQG VKNMDACMLP GMPGETAHSL 480 LLQPTWDNDL FDIFGSEFHQ LGHNVDANLV SSCDAKSHSL DRDATEPSIC LDSSSLFSSL 540 DNDFPCSGIF SLTNTDQLLD AVISNVNPSS KQSSDDNASC KTALTDIPNI CHFGLEELKQ 600 CDSSGIPSTV IKNESAQIVK QPYYFDKTED GCHSQNNGAQ KSQIRLWIEN GQNMKCESAS 660 ASNSKGLDAP SKSNRKRSRP GESSKARPKD RQLIQDRIKE LREMVPNGAK QCSIDALLEK 720 TVKHMLFLQS VTKHADKLKD STESKILGSE NGPVWKDYFE GGATWAFDVG SQSMTCPIIV 780 EDLDRPRQML VEMICEDRGI FLEIADFIKG LGLTILRGVM EARKSKIWAR FTVEANRDVT 840 RMEIFLSLVR LLEPNCDGSG AAENPGNSVN MPLGLVHQPV IPATGGIQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_60274.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369500 | 0.0 | AK369500.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2092I05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178282.1 | 0.0 | transcription factor LHW-like isoform X1 | ||||
TrEMBL | M0XI70 | 0.0 | M0XI70_HORVV; Uncharacterized protein | ||||
STRING | MLOC_60274.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2654 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31280.1 | 6e-52 | conserved peptide upstream open reading frame 7 |