PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_60270.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 313aa MW: 34033.5 Da PI: 4.3944 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.5 | 3.6e-11 | 240 | 280 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+AveY+k Lq MLOC_60270.3 240 RKRRERINERLKVLQNLVPNG-----TKVDISTMLEEAVEYVKFLQ 280 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.32 | 230 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.64E-15 | 230 | 296 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-13 | 235 | 293 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-12 | 236 | 285 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.22E-13 | 239 | 284 | No hit | No description |
Pfam | PF00010 | 1.6E-8 | 240 | 280 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MESGGVIAEA GWDSLGLSSQ AEESEMMEQL LGTFPSNGEE EHQELPWSVQ ATHAYYGHCN 60 GSSNAYSSAS SNSVGSLILD VPSDYGGFYL GDSNGIGSCT AALDLNMVQE QGAAQFMDAI 120 FNPSYGNGDS SCDDLEDSSM NLLDSIDTSN KRKRQDQGKI ADQTSGRKCS RKVDSKRAKK 180 VMQCEGDDGT TADDTNKQSL SCCTSELDSN ASQEPPVASK PKGKAQAGRQ TTDPQSLYAR 240 KRRERINERL KVLQNLVPNG TKVDISTMLE EAVEYVKFLQ LQIKLLSSDE MWMYAPIAYN 300 GMNIGIDLNL SQH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_60270.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188753.1 | 0.0 | transcription factor bHLH54-like | ||||
TrEMBL | M0XI55 | 0.0 | M0XI55_HORVV; Uncharacterized protein | ||||
STRING | MLOC_60270.4 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27740.1 | 1e-47 | root hair defective 6-like 4 |