PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_59663.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB_related
Protein Properties Length: 344aa    MW: 37600.6 Da    PI: 5.168
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_59663.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.6e-072252246
                     T-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqk 46
                     ++W+ Ia+ m+ gRt++++k+ w++
     MLOC_59663.4  2 RRWSQIAAQMP-GRTDNEIKNLWNS 25
                     56*********.*********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001671.76E-4127No hitNo description
PROSITE profilePS5129415.784131IPR017930Myb domain
SuperFamilySSF466891.3E-7238IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.0E-12244IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MRRWSQIAAQ MPGRTDNEIK NLWNSSLKKK LRQKGIDPNT HKPLTEADRS GAAPTISNER  60
TSGSSDVNPS STGALGNFGH LLSETAQSSM LLPVYDKKRP ETPSLARPKV PAKELFLEQL  120
TAGHESPSSC RSSGPTLYFP FQQQLGYSNE CGSGDGANMN SLWFNQNDFN CSTISTVMPT  180
VSPSALSTPM GLNLPPDNHR HGGTGIGSAP FYWDGVNPSS SGSTGSSGSN SMGFEPQSTN  240
SILENSVFPW TDIGVGQEKD TRVQLVEELK WPDLLHGTFA EATTAMQNQS QSLYDDVIKA  300
ESQFNMEGIC ASWFQNQQPQ QQLQAASDMY DKDLQRMPLS FEHI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12632LKKKLRQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_59663.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2507330.0AK250733.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf88d11, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188724.10.0transcription factor LAF1-like
TrEMBLM0XFV60.0M0XFV6_HORVV; Uncharacterized protein
STRINGMLOC_59663.60.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-14myb domain protein 61