PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_59593.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 474aa    MW: 52147.9 Da    PI: 4.7524
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_59593.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS209.12.5e-641034652373
          GRAS   2 velLlecAeavssgdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                   ++lLl+ Aeav++gd + a a+ +rl  l      + ++ ++ Rla +f ++L++r+++      ++ ++s+ +    s++++++++ +e+sP+ kf
  MLOC_59593.1 103 TDLLLTGAEAVEAGDPRFALAVFSRLDGLllgtpENAAAGSFDRLAYHFSQGLRSRISS------ASTSCSPPE-PLASDRMSVQQIIQELSPFAKF 192
                   689***********************99878655555668******************9......333333333.2478999*************** PP

          GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                   +h+taNqaIl+a++g+ +vH++D++i++G+QWp+L+  La   +g  s+ +T+v + +  s    ++ ++ L++fAe+l++pf+++ l  ++    +
  MLOC_59593.1 193 AHFTANQAILDATKGDAHVHVVDLNIGEGIQWPSLMSDLAR--HGGISFHLTAVTADADYSDAVHHASARWLSEFAESLNLPFQYSSLCLHSD--ED 285
                   ****************************************8..46689********777788888889999****************855544..45 PP

          GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevL.klvkslsPkvvvvveqeadh.nse......sFlerflealeyysalfdsleaklpres 279
                   l+e++ +++ +++ ++    +       +l s+ +++L  +v  l+Pk++v++e+e+ + ++e      sF++ f+eal++++++f+sl++ ++  +
  MLOC_59593.1 286 LHEFSKNSKGSVIFSCDTTSMPY-----KLLSKLPALLpACVELLQPKLMVIIEEELVRiGKEvslckaSFVDFFFEALHHFTTVFESLASCFAGGN 377
                   69999999999999998855444.....45566778883568999**********95554555666666********************99888888 PP

          GRAS 280 ..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                        + vEre++g++i++ v + g+   e +         le+ G  +  ls  +++qa++l+  ++ +g+++ +e+g l+l+Wk+rpL+svS+W
  MLOC_59593.1 378 qgVCLRLVEREMVGPRIQDFVGQYGSVTAEVNA-----PVVLERYG--ACDLSGCNVAQARMLVGLFN-RGFEIVHEKGRLMLCWKSRPLTSVSVW 465
                   5667899*******************9555555.....56778776..899*****************.*************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.37776447IPR005202Transcription factor GRAS
PfamPF035148.7E-62103465IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
METMSYPCSP LLSLPTHEES NFFIWSPQVA LHENATIHVD HSTDQQHDNV FLDTAAQHYA  60
NDWQQQDASD VGVFTYCGER ILGQESGNLV AIQEELMEEN SLTDLLLTGA EAVEAGDPRF  120
ALAVFSRLDG LLLGTPENAA AGSFDRLAYH FSQGLRSRIS SASTSCSPPE PLASDRMSVQ  180
QIIQELSPFA KFAHFTANQA ILDATKGDAH VHVVDLNIGE GIQWPSLMSD LARHGGISFH  240
LTAVTADADY SDAVHHASAR WLSEFAESLN LPFQYSSLCL HSDEDLHEFS KNSKGSVIFS  300
CDTTSMPYKL LSKLPALLPA CVELLQPKLM VIIEEELVRI GKEVSLCKAS FVDFFFEALH  360
HFTTVFESLA SCFAGGNQGV CLRLVEREMV GPRIQDFVGQ YGSVTAEVNA PVVLERYGAC  420
DLSGCNVAQA RMLVGLFNRG FEIVHEKGRL MLCWKSRPLT SVSVWAPILK ERSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-3313346748380Protein SCARECROW
5b3h_A5e-3313346747379Protein SCARECROW
5b3h_D5e-3313346747379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_59593.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176685.10.0nodulation-signaling pathway 2 protein-like
TrEMBLM0XFI80.0M0XFI8_HORVV; Uncharacterized protein
STRINGMLOC_59593.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76843250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-36GRAS family protein