PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_59516.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family CPP
Protein Properties Length: 609aa    MW: 67104.6 Da    PI: 8.852
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_59516.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR41.52.6e-13172209341
           TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                   +k+C+Ck skClkkYCeCfa+g++C++ C+C++C N+ +
  MLOC_59516.4 172 RKHCKCKYSKCLKKYCECFASGSYCKD-CNCKNCYNNVR 209
                   699************************.********976 PP
2TCR48.71.5e-15256296141
           TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                   k++kgC+Ck+s+ClkkYCeCf ++  Cse+CkC dCkN e+
  MLOC_59516.4 256 KHTKGCHCKRSECLKKYCECFRSNILCSENCKCMDCKNYES 296
                   589***********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.4E-12170210IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.189171296IPR005172CRC domain
PfamPF036382.2E-9173207IPR005172CRC domain
SMARTSM011143.2E-18256297IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.0E-12259294IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MDNPLNLPSG SVRPNLGSAF CAGKRESAAI ATSLSQALGP PRTPPRGQVI PLKVRSSLPL  60
WPPVPWPTLM VRKHHMPFPS QPAAKKLQVR RRSPVLSQDL PLMEALQVAG LPPPRVQLLP  120
LQQAPPVLKH SLPKTEVPVV LPMPATSVGV TWNARYPQSE TSWESTDRTS GRKHCKCKYS  180
KCLKKYCECF ASGSYCKDCN CKNCYNNVRH EAARQDAIDA AIERNPMAFM PKIENIPPHA  240
AQNREFKVAE GPLVGKHTKG CHCKRSECLK KYCECFRSNI LCSENCKCMD CKNYESSEDR  300
KAIRRITQHQ QHLVYAHHMQ NPALVGITGP YAALSHSAEK LSNLSVASSG RDQLISNNDS  360
SQVTSSLLTH VPIEGTGTKS DVEVEPHGVT YRPLLADVIQ IENVNELCKL LLLVSRQAAG  420
ASVGVKENTN RRKLDRADSC LSSINPDTEA VEKQRDEQVC STENSLTAVP VSEVRAGTPR  480
SDPSDTWKYD RRPVSPGTRE LMCNEQDRLF LTPSFAAVTP SDTKQRLSDT YKEQEKRILK  540
TLHDYLGEVV NCGRFHEAKL SSMPSKFHEQ TSVGSSCGSS ISRVAEVAGV GETIRQALHS  600
PASIKSPGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-2617230311130Protein lin-54 homolog
5fd3_B9e-2617230311130Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_59516.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3721950.0AK372195.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2147P02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198634.10.0protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLM0XF690.0M0XF69_HORVV; Uncharacterized protein
STRINGMLOC_59516.40.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.14e-60Tesmin/TSO1-like CXC domain-containing protein