PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_59503.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 481aa MW: 51474.2 Da PI: 4.5182 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.3 | 2e-11 | 331 | 376 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L++l+P++ K +K+++L + ++Y+k Lq MLOC_59503.1 331 HSIAERLRREKISERMKNLQDLVPNS-----NKADKSSMLDEIIDYVKFLQ 376 99***********************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.61E-12 | 324 | 380 | No hit | No description |
SuperFamily | SSF47459 | 1.14E-16 | 324 | 386 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.901 | 326 | 375 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-16 | 328 | 385 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-8 | 331 | 376 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.8E-13 | 332 | 381 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence Send to blast |
MNYSDGSFFP SWPGNSASEN YSFVDGSVES YTEEGSMPTT GYFRARSNQN LTFDEHEQNP 60 AMLANGCLPY NTQTDLLSGE ILSDDKPSNS LVELSQLQNN VCLQNNLIPP GTLQCTSTPG 120 TFDLQLDTPG LLELPHALSS SIESNGSEVS AFLADVQAVS SASTLCSTFQ NVPSYMEPVS 180 LEAFSFQGMQ NAAMFNNASH SNGNLSVFDE ATMASLHDSK EFLNGSISSL GTGQQSQLAG 240 GGLKAEQQEQ NTMCNIPLPS FVSASQMAVS EAQGALIPSK TTSITHNNKS EYPIPISHSA 300 DVQHKANSGN GNSASAKPRA RARRGQATDP HSIAERLRRE KISERMKNLQ DLVPNSNKAD 360 KSSMLDEIID YVKFLQLQVK VLSMSRLGAP GAVLPLLAES QTEGRSNSPL SSPTTSQGLL 420 DVAGPEDSLV FEQEVIKLME TSITNAMQYL QNKGLCLMPI ALASAISNQK GTSAAAIPPE 480 R |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_59503.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363663 | 0.0 | AK363663.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2017O24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198859.1 | 0.0 | uncharacterized protein LOC109784671 | ||||
TrEMBL | M0XF36 | 0.0 | M0XF36_HORVV; Uncharacterized protein | ||||
STRING | MLOC_59503.1 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3254 | 38 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 8e-47 | LJRHL1-like 1 |