 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
MLOC_59277.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
| Family |
SRS |
| Protein Properties |
Length: 302aa MW: 31405.7 Da PI: 8.6512 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MLOC_59277.1 | genome | IBSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 209.7 | 7.3e-65 | 90 | 243 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..kskkqsalsstklssaeskk 98
g+++C+dCGnqakkdC h+RCRtCCksrgfdC+thv+stW+paa+rre+q +s a a+a++k++r + ++++++++s+t++s+++s++
MLOC_59277.1 90 GSTTCNDCGNQAKKDCPHQRCRTCCKSRGFDCTTHVRSTWIPAARRREKQPLGGDLSPPAPP--ATATTKKPRLHssQTTTTTTTSRTSTSNGTSSS 184
7789********************************************99888887666655..455555555551155555555666666665554 PP
DUF702 99 eletss.....lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+ + lP++v+++avfrcvrv+svddg +e+aYq+avsi+Gh+f+G+LydqG+++
MLOC_59277.1 185 QQD--ApfkdsLPRHVRAPAVFRCVRVTSVDDGADEFAYQAAVSINGHMFRGFLYDQGAHD 243
444..233556***********************************************975 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 302 aa
Download sequence Send
to blast |
MVVLTPTASF HHQRAASAAA AADGADPGFA LLSAEQCGLA GPGAPKSGSA IQFWQSHSQP 60
TTPPPAAQAD KKQLASAVDY GGGVSSGSGG STTCNDCGNQ AKKDCPHQRC RTCCKSRGFD 120
CTTHVRSTWI PAARRREKQP LGGDLSPPAP PATATTKKPR LHSSQTTTTT TTSRTSTSNG 180
TSSSQQDAPF KDSLPRHVRA PAVFRCVRVT SVDDGADEFA YQAAVSINGH MFRGFLYDQG 240
AHDGRASNDE PSHAHAAAVR SISDLHLGNA NASAVPPDMY NTVSGALILG GLGYGKHFTS 300
VY
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK374532 | 0.0 | AK374532.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3068E07. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT5G12330.2 | 2e-42 | Lateral root primordium (LRP) protein-related |
