PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

G2-like

Protein Properties

Length: 415aa MW: 46142.7 Da PI: 6.5548

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_5837.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.5	2e-30	229	283	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rW+ eLHerFvea+++LGG+ekAtPk +l+lmkv+gLt+ hvkSHLQ YR MLOC_5837.1 229 KTRMRWSLELHERFVEALKKLGGPEKATPKGVLNLMKVEGLTIFHVKSHLQNYRH 283 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.124	226	286	IPR017930	Myb domain
SuperFamily	SSF46689	7.35E-15	227	283	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.4E-27	228	283	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-23	229	283	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-8	231	282	IPR001005	SANT/Myb domain
Pfam	PF14379	5.2E-21	317	362	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MGTQSVISVE HFIAPDIRAH TCNAPQPSVH QMFNAKSDIY SSVDDVCHVS YADLPGPISS 60 SSSTFCASMY SSSSTNSKLY RQISGPPFLP HPPKCDQQQF SAVQSSVSAL LFASDPSNGG 120 QGHDEHSHDL KDFLNLCGNP SDSSFHRGGS AMAFSEQLEF QFLSEQLGIT LTDNEECPRL 180 DDIYGIPPQC SPILVSPCSD PEGLHSGGSP AEVRLSSSPS SSGETACNKT RMRWSLELHE 240 RFVEALKKLG GPEKATPKGV LNLMKVEGLT IFHVKSHLQN YRHVKYIPEK KEVKRPCSED 300 NKAKSASGID SGKKKSFQMA ETLRVQMEVQ KQLHEQLEVQ RKLQLRIEEH ARYLQQILEQ 360 QKDRKSPVPK PKEETEVNTT SAPSLKRKIS DTEIEHNSQM DSRWPELQLN LESEP

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MGTQSVISVE HFIAPDIRAH TCNAPQPSVH QMFNAKSDIY SSVDDVCHVS YADLPGPISS  60
SSSTFCASMY SSSSTNSKLY RQISGPPFLP HPPKCDQQQF SAVQSSVSAL LFASDPSNGG  120
QGHDEHSHDL KDFLNLCGNP SDSSFHRGGS AMAFSEQLEF QFLSEQLGIT LTDNEECPRL  180
DDIYGIPPQC SPILVSPCSD PEGLHSGGSP AEVRLSSSPS SSGETACNKT RMRWSLELHE  240
RFVEALKKLG GPEKATPKGV LNLMKVEGLT IFHVKSHLQN YRHVKYIPEK KEVKRPCSED  300
NKAKSASGID SGKKKSFQMA ETLRVQMEVQ KQLHEQLEVQ RKLQLRIEEH ARYLQQILEQ  360
QKDRKSPVPK PKEETEVNTT SAPSLKRKIS DTEIEHNSQM DSRWPELQLN LESEP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-23	229	286	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-23	229	286	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-23	229	286	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-23	229	286	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-23	229	286	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-23	229	286	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-23	229	286	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-23	229	286	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_5837.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP330484	0.0	KP330484.1 Triticum aestivum MYB transcription factor SM153-2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187502.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3-like
Refseq	XP_020187503.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3-like
Refseq	XP_020187504.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3-like
Swissprot	Q6YXZ4	1e-137	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	A0A3B6NMT1	0.0	A0A3B6NMT1_WHEAT; Uncharacterized protein
TrEMBL	A0A446V6L2	0.0	A0A446V6L2_TRITD; Uncharacterized protein
STRING	MLOC_5837.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4526	37	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	6e-77	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]