 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
MLOC_5832.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
|
| Family |
NAC |
| Protein Properties |
Length: 405aa MW: 43822.7 Da PI: 5.7235 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| MLOC_5832.1 | genome | IBSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 162.2 | 1.9e-50 | 22 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97
lppGfrFhPtdee++++yL +k + ++ +++ evd++++eP+dLp k++ +ekewyfF+++d ky+tg+r+nratk+gyWkatgkd+e+++ +
MLOC_5832.1 22 LPPGFRFHPTDEEIITCYLLRKFLDPSFVS-RAVGEVDLNSCEPRDLPGKANMGEKEWYFFVHKDLKYPTGSRANRATKEGYWKATGKDREIFKPrAR 118
79*************************888.88***************99999****************************************98677 PP
NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128
elvg+kktLvfy+grap+g k++Wvmhe+rl
MLOC_5832.1 119 ELVGMKKTLVFYTGRAPRGAKSEWVMHEFRL 149
88***************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 405 aa
Download sequence Send
to blast |
MVESIAAGAG SEEQGRGGGL SLPPGFRFHP TDEEIITCYL LRKFLDPSFV SRAVGEVDLN 60
SCEPRDLPGK ANMGEKEWYF FVHKDLKYPT GSRANRATKE GYWKATGKDR EIFKPRAREL 120
VGMKKTLVFY TGRAPRGAKS EWVMHEFRLQ GKSRDQTMNN PKDEWVVCKV FNKKGEAKAA 180
RDADVDAEYS AVTTPNASSV VDAGEGAGDF TDSMFTIDPL YIPNSDEYTS NQLPAETTTT 240
TNTNGDPPPY NADYYYPSVP TTAGSFNVMS NYSLTNAPSN AQTATAMASS VPATSGSSWQ 300
HMLMNTAPHG GMVMGRRSYD VNLHEQQAIM VRALGGAVGA QNFGEPANGL QLPSSAVTTG 360
NVLPQQGKLG SYDDGGEFPY GNYDLASAAM NGRPAAANNP GARFY
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 8e-49 | 20 | 178 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 8e-49 | 20 | 178 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 8e-49 | 20 | 178 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 8e-49 | 20 | 178 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 8e-49 | 20 | 178 | 15 | 170 | NAC domain-containing protein 19 |
| 4dul_B | 8e-49 | 20 | 178 | 15 | 170 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK371156 | 0.0 | AK371156.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2126K19. |
