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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_58019.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | WRKY | ||||||||
Protein Properties | Length: 676aa MW: 73309.9 Da PI: 6.5503 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.3 | 2.7e-32 | 276 | 332 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vk+se+prsYY+Ct+++Cpvkkkvers+ d++++ei+Y+++Hnh+ MLOC_58019.2 276 EDGYNWRKYGQKQVKSSEHPRSYYKCTHPDCPVKKKVERSQ-DGQITEIVYKSSHNHP 332 7****************************************.***************7 PP | |||||||
2 | WRKY | 104 | 8.1e-33 | 488 | 546 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++d k v++tYeg+Hnhe MLOC_58019.2 488 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHQGCSVRKHVERASHDLKSVITTYEGKHNHE 546 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.6E-29 | 264 | 334 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.227 | 270 | 334 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.59E-26 | 271 | 334 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-34 | 275 | 333 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.9E-25 | 276 | 332 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.1E-37 | 473 | 548 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.28E-29 | 480 | 548 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.883 | 483 | 548 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.3E-38 | 488 | 547 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-25 | 489 | 546 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 676 aa Download sequence Send to blast |
MAGTSDRGSL MEDWMAMPPT PSPRTLMSSF LNEDFSSGQF SNFFGEHVSN KPHDQSEKRG 60 ELVDLREQVP AQPPTAMPQK DFSLQPNSFN ANQKSNPQGS LAERRASRAG FSIPKIDTSR 120 VGSSTVIRSP IAIPPGLSPT TLLESPVFLY NSMAQPSPTT GKLFVASAAN STMPPDSTFS 180 NDVFSFQPHS GPTSYSNVEK GYNVCHQNQS MSNMHQQGSS LQSSFTAVKD SADEAIVKPK 240 TSDSMFSDNH TSEEQEENEE DQNEEYSSAT NSNPGEDGYN WRKYGQKQVK SSEHPRSYYK 300 CTHPDCPVKK KVERSQDGQI TEIVYKSSHN HPLPPPNRRS GIPSSQINDP QVHVLERPGL 360 HAGLNTASLW ENGKSECIQD AQGVEGRSAA CPPVSAYGDT SIMESQDAAD VSSTLSNEID 420 RATQGTISLD CDGGEDETES KRRKLDALAA VTLPTATTTS SIDMVAAASR AVREPRVVVQ 480 TTSEVDILDD GYRWRKYGQK VVKGNPNPRS YYKCTHQGCS VRKHVERASH DLKSVITTYE 540 GKHNHEVPAA RNSGNGGSGS GSAQPSAPQA NISHRRQEQA QGSYPQFGGA TPFGSFGLPP 600 RGHLGAAGNF HFGMGPPGMS MPPMPAARHP PSMMQGYPGL MMQEGQMKPE PDQQSGFASA 660 SAYQQMMGRP PFGPQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-36 | 276 | 549 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 8e-36 | 276 | 549 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00071 | PBM | Transfer from AT5G56270 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_58019.2 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK362158 | 0.0 | AK362158.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2002O24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020200291.1 | 0.0 | probable WRKY transcription factor 2 | ||||
TrEMBL | M0X915 | 0.0 | M0X915_HORVV; Uncharacterized protein | ||||
STRING | MLOC_58019.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2075 | 38 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 1e-111 | WRKY DNA-binding protein 2 |