PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_57622.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 358aa    MW: 38626.2 Da    PI: 6.6269
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_57622.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.2e-08170217455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  MLOC_57622.4 170 SHSLAERVRRERISQRMKFLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 217
                   8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-16164231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.10E-10164221No hitNo description
Gene3DG3DSA:4.10.280.101.6E-15166229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.964166216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-6170217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-8172222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEGRAGGGSG DYISSLLTSS PMLDFGMLDG AVTAGGDCLD KFCGDPGFAE RAARLSSFNG  60
QHLAPGLLGM LPPAPGGEFG GSREASSVSD PASAMKDANA KKRKAPASKG KAKEPSLSTS  120
CQVGEHKEPD AKRCRTGDAE KKGKGKNAKP VEPPKDYVHV RARRGQATDS HSLAERVRRE  180
RISQRMKFLQ DLVPGCNKVI GKALMLDEII NYVQSLQRQV EFLSMKLATV NPLDFSNLPT  240
LLHKDMYGPS ASSVFSLESS SSAFPFSDQG DVFQSFLPNS MESQCTLNQL DLALSQATNA  300
AQYGFQDATA STNLQQRNFW EDDLQSVFHV DNRQSQDNGV SAESFHGDLQ AGQMKMEF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00036PBMTransfer from AT5G48560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_57622.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3675800.0AK367580.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2059B18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146738.10.0transcription factor bHLH78-like isoform X2
TrEMBLM0X7F00.0M0X7F0_HORVV; Uncharacterized protein
STRINGMLOC_57622.30.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.18e-60bHLH family protein