PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_57622.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 393aa    MW: 41912.3 Da    PI: 7.4355
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_57622.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08195242455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  MLOC_57622.3 195 SHSLAERVRRERISQRMKFLQDLVPGC----NKVIGKALMLDEIINYVQSLQ 242
                   8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-16189256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.96E-10189246No hitNo description
PROSITE profilePS5088814.964191241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-15191254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-6195242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-8197247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MEGRAGGGSG DYISSLLTSS PMLDFGMLDG AVTAGGDCLD KFCGDPGFAE RAARLSSFNG  60
QHLAPGLLGM LPPAPGGEFG GSREASSVSD PASAMKDANA KKRKAPASKG KAKEPSLSTS  120
CQVGEHKEPD AKRCRTGDAE KKAAAPVRPK AEQAGSDSSV EDGEQRKGKG KNAKPVEPPK  180
DYVHVRARRG QATDSHSLAE RVRRERISQR MKFLQDLVPG CNKVIGKALM LDEIINYVQS  240
LQRQVEFLSM KLATVNPLDF SNLPTLLHKD MYGPSASSVF SLESSSSAFP FSDQGDVFQS  300
FLPNSMESQC TLNQLDLALS QATNAAQYGF QDATASTNLQ QVILALRILW VLASLDAGLI  360
LIHFGFVARL SAEELLGGRS PERFSCGQQT EPG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00036PBMTransfer from AT5G48560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_57622.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3675800.0AK367580.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2059B18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146738.10.0transcription factor bHLH78-like isoform X2
SwissprotQ9FJL45e-58BH078_ARATH; Transcription factor bHLH78
TrEMBLA0A287WII90.0A0A287WII9_HORVV; Uncharacterized protein
STRINGMLOC_57622.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-56bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]