PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

C2H2

Protein Properties

Length: 461aa MW: 49774.8 Da PI: 8.2069

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_57518.3	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.8	4.1e-05	81	101	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H MLOC_57518.3 81 CEICGKGFQRDQNLQLHRRGH 101 *******************88 PP
2	zf-C2H2	11.4	0.001	156	178	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + MLOC_57518.3 156 WKCDKCSKKYAVQSDWKAHSKIC 178 58*****************9876 PP
3	zf-C2H2	11.7	0.00081	186	204	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + MLOC_57518.3 186 DCGTVFSRRDSFITHRAFC 204 9**************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.91E-8	78	101	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.0E-5	78	101	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.489	79	101	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.076	79	101	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	81	101	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	121	151	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.6E-4	144	177	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.91E-8	151	176	No hit	No description
SMART	SM00355	150	156	176	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MYHHHLQQRG EAEEAASASA DQDSSMSNLT TSASASANPP PPPPTTASNK RKRSLPGNPD 60 PESEVVALSP ATLMATNRFL CEICGKGFQR DQNLQLHRRG HNLPWKLKQR GSKEVVRKKV 120 YICPEASCVH HDPSRALGDL TGIKKHFFRK HGEKKWKCDK CSKKYAVQSD WKAHSKICGT 180 REYKCDCGTV FSRRDSFITH RAFCDALTEE SNKAISGLPL APPMAHAQHH AMLYSPHDLM 240 QQHQELAAFQ DHHHPQVMQQ HCNYDVKPEM QPWPTMPYDD VHHPLLQPLC SATAQGSATS 300 VPTPAAAAHL SATALLQKAA QMGATIGGAG AGGAGVHYTQ MAGSATSATG SATFGLGLSC 360 LSNQQMMSLA RTASQGRSGE EGASGGANDG MTRDFLGLRA FSHRDILGLA GFDSSCMGAA 420 VNTASNNINM APCYDPQQQG QPQPQQQQSS NEPWHGMGSH S

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MYHHHLQQRG EAEEAASASA DQDSSMSNLT TSASASANPP PPPPTTASNK RKRSLPGNPD  60
PESEVVALSP ATLMATNRFL CEICGKGFQR DQNLQLHRRG HNLPWKLKQR GSKEVVRKKV  120
YICPEASCVH HDPSRALGDL TGIKKHFFRK HGEKKWKCDK CSKKYAVQSD WKAHSKICGT  180
REYKCDCGTV FSRRDSFITH RAFCDALTEE SNKAISGLPL APPMAHAQHH AMLYSPHDLM  240
QQHQELAAFQ DHHHPQVMQQ HCNYDVKPEM QPWPTMPYDD VHHPLLQPLC SATAQGSATS  300
VPTPAAAAHL SATALLQKAA QMGATIGGAG AGGAGVHYTQ MAGSATSATG SATFGLGLSC  360
LSNQQMMSLA RTASQGRSGE EGASGGANDG MTRDFLGLRA FSHRDILGLA GFDSSCMGAA  420
VNTASNNINM APCYDPQQQG QPQPQQQQSS NEPWHGMGSH S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-34	152	210	3	61	Zinc finger protein JACKDAW
5b3h_F	4e-34	152	210	3	61	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	118	KLKQRGSKEVVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00206	DAP	Transfer from AT1G55110	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_57518.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK362855	0.0	AK362855.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010K06.
GenBank	AK375351	0.0	AK375351.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3091O14.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020184321.1	0.0	protein indeterminate-domain 7-like
Swissprot	Q8H1F5	1e-117	IDD7_ARATH; Protein indeterminate-domain 7
TrEMBL	F2DG38	0.0	F2DG38_HORVV; Predicted protein
STRING	MLOC_57518.3	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	5e-95	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]