PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_57269.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 353aa    MW: 37257.9 Da    PI: 7.9055
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_57269.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.33.3e-09160207455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR+ri +++  L+el+P +    +k   Ka +L + ++Y++sLq
  MLOC_57269.2 160 SHSLAERVRRERISERMRYLQELVPGC----DKVTGKAGMLDEIINYVQSLQ 207
                   8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.06E-16154223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.49E-10154211No hitNo description
PROSITE profilePS5088815.504156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-16156219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6160207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-9162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MAHCGGGGGG PGPAASVESH FQGLLDDDDK YRALCGAFGY LQQQEWPDLS GACYAAFGAP  60
PPPPAGTSNG AGNSFSRSGS ASSGGGSTKR KPDAYLDAKD GCKRPRGKQQ LRDPDEAGGA  120
AKGRPEKPKA CARKKPEAAA AGQKTDYIHV RARRGQATDS HSLAERVRRE RISERMRYLQ  180
ELVPGCDKVT GKAGMLDEII NYVQSLQKQV EFLSMKIAAA NPVVNFNIVD DLFGGRRMSQ  240
PCGPAAALPA MTLPMHHGQL DPSCLQMSNT AMQQMQQPAA GFGLDMVLNH PYPLRSAAAT  300
PASASAATSV ESCLDVNGAA AWDIASQNLF SGFDAQFQSV QSGCLLDNLK MEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_57269.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3602380.0AK360238.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1113K05.
GenBankAK3606200.0AK360620.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1122A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200434.10.0transcription factor bHLH137-like
TrEMBLM0X5U50.0M0X5U5_HORVV; Uncharacterized protein
STRINGMLOC_57269.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82523749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.13e-37cryptochrome-interacting basic-helix-loop-helix 1