PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56963.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GATA
Protein Properties Length: 405aa    MW: 42984.3 Da    PI: 4.9726
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56963.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.15e-18325358134
          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                   C++C+  kTp+WR gp g+ktLCnaCG++y++ +
  MLOC_56963.3 325 CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGR 358
                   *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.62E-14318381No hitNo description
SMARTSM004011.9E-16319369IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.332319355IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.3E-14323356IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.35E-14324381No hitNo description
PfamPF003201.1E-15325358IPR000679Zinc finger, GATA-type
PROSITE patternPS003440325350IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MASGRFMEEM MREHEQSLLE ASCGGLFDHI EDLLDFPKED SPEDVLLLDA PVPDSPLAAC  60
VLAGVPPPPP ASLEQQHAAS LMAPPPPPAG DHSAAFLGAL GDTHIGTCDE LDMDMAQLEW  120
LSGLFDDTSI PHEPAFACAA PIIRASALSA NAGVVLPDKM EDALFRSSSP TSVLEDGANN  180
VNVNMNNNSG GSSASSTSSS ASSSSESFSG SGRPWSVPLS PRPEPPVLVI PARARSKRSR  240
ASAFPTAIRA AVPAPEATIL VPTPMFSSTS SYSEEPECIA ESNSQPKKKK KAKRPTPPVT  300
SDAEGDADYE EGGGAALPAG EVRRCTHCQI EKTPQWRAGP LGPKTLCNAC GVRYKSGRLF  360
PEYRPAASPT FVPAIHSNSH KKVVEMRQKV EPKGDDLLQF IRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_56963.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3566850.0AK356685.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1038B06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165199.10.0GATA transcription factor 11-like
RefseqXP_020165203.10.0GATA transcription factor 11-like
TrEMBLA0A287V3910.0A0A287V391_HORVV; Uncharacterized protein
STRINGMLOC_56963.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-37GATA family protein