PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_5684.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | bHLH | ||||||||
Protein Properties | Length: 208aa MW: 23110.3 Da PI: 9.0296 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.3 | 2.7e-08 | 27 | 77 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54 a +e+Er RR++++ ++L +l+Pk +++ ++ L +A YIk+L MLOC_5684.2 27 ARKEVERERRQHMKVLCAKLFSLIPKeH--LSNTNtVTQLGSLDEAASYIKKL 77 779***********************54..677777***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-9 | 18 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.315 | 23 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.13E-4 | 24 | 81 | No hit | No description |
Pfam | PF00010 | 2.6E-5 | 27 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-11 | 27 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-4 | 29 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MEMQAKEPRG GKRSRMSGGT TAARVVARKE VERERRQHMK VLCAKLFSLI PKEHLSNTNT 60 VTQLGSLDEA ASYIKKLKER IDELHNRRNS AQAMVAARGA SGASTPTTTP TTSGGKGSTE 120 GEKHWEASAP VVEVRQHDDT SMDVVLVCST ERPIMLHQVI TILEEEGAEV VNANHSVAGH 180 QIFYTIHSRV CTYIGLQLQN WHRCFKCF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | MLOC_5684.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK369919 | 0.0 | AK369919.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2101C07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020190834.1 | 1e-87 | uncharacterized protein LOC109776583 | ||||
TrEMBL | A0A287JV24 | 1e-147 | A0A287JV24_HORVV; Uncharacterized protein | ||||
STRING | MLOC_5684.3 | 1e-130 | (Hordeum vulgare) |