PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_56814.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 456aa    MW: 47284.8 Da    PI: 4.6829
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_56814.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.5e-11340382754
                   HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
           HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                   ++ErrRR+++N+++  Lr+++P  +      K++ a+iL  AveY+++L
  MLOC_56814.1 340 MAERRRRKKLNDRLYMLRSVVPRiS------KMDRASILGDAVEYLQEL 382
                   79*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.485333382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16336404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-14339388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-9339382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16340395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.09E-13340386No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MLPQFNTSLS WVQEGGDGHE HQGLGHDQAA AMGMLPMMGQ EAGNQRLLPM PSGEGGGFGA  60
PPMLPEHGWY FDDQGALGGA AGNGSMVPSP ATMEATGSSS GFGAGSQMFP LLNPGVAGTG  120
PLDVSEFDLD IPGVGGGDLS AFLGAGNASN ASLLPHGDSE FLGSFRGFGT APAQRTDFGG  180
LAGYDLFGTG ARGWSGPSLE VPAAPASLTA PFSGQGNAAV LRPLENLPAS GAQPTLYQKR  240
ALRRNAGEED GERKRKAPAV ASASAFSVER AGMMILDDAD DDTISLDASG LNYDSEDGRD  300
VEESGRKDGK ESNVNSTVTG GAAAEGNKGK KKGMPAKNLM AERRRRKKLN DRLYMLRSVV  360
PRISKMDRAS ILGDAVEYLQ ELKQKINDLQ NELDSSPSTS SLPPTPTSFN PLTPTMPALP  420
SRVKEELTSP TAQQPCAGPS TSTCYALAGL VLCTLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-15335392663Transcription factor MYC2
5gnj_B1e-15335392663Transcription factor MYC2
5gnj_E1e-15335392663Transcription factor MYC2
5gnj_F1e-15335392663Transcription factor MYC2
5gnj_G1e-15335392663Transcription factor MYC2
5gnj_I1e-15335392663Transcription factor MYC2
5gnj_M1e-15335392663Transcription factor MYC2
5gnj_N1e-15335392663Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1329347KKKGMPAKNLMAERRRRKK
2341348ERRRRKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_56814.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168495.10.0transcription factor ICE1-like isoform X1
TrEMBLA0A3B6INZ20.0A0A3B6INZ2_WHEAT; Uncharacterized protein
TrEMBLA0A446RS830.0A0A446RS83_TRITD; Uncharacterized protein
STRINGMLOC_56814.30.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.42e-35bHLH family protein